Pairwise Alignments

Query, 297 a.a., RluA family pseudouridine synthase from Methanococcus maripaludis S2

Subject, 329 a.a., RluA family pseudouridine synthase (RefSeq) from Shewanella loihica PV-4

 Score =  102 bits (255), Expect = 9e-27
 Identities = 75/312 (24%), Positives = 154/312 (49%), Gaps = 25/312 (8%)

Query: 6   KILNLTVDSKIAGNKLIDVLKDNFE-LSNKMIKKFDKENKIFVNSKNISLKSKLKENETV 64
           K+  +T+D    G ++ + L    + +   MI +  ++ ++ VN K I  + KL++ + V
Sbjct: 19  KVELVTIDEDNLGQRIDNFLVTKLKGVPKSMIYRIVRKGEVRVNKKRIKPEYKLQDGDIV 78

Query: 65  SVE-IDYGINNITP---------ENLTLNVIYEDDDLLIVDKSKNMVVHPTKNVLSGTLA 114
            +  +    +   P           L   +++ED  +++++K   + VH    V  G   
Sbjct: 79  RIPPVRVSASEDKPGPSAKLTKVSQLEGRILFEDKAIIVLNKPAGIAVHGGSGVDFGV-- 136

Query: 115 NAISNHQKINNQNYKIRFVNRLDMDTTGLLIVAKNSYSHQQLAKQMDEGILEKIYIAVVN 174
             I   + +  Q   +  V+RLD +T+G+L++AK   + + L  Q+    ++K Y+A+V 
Sbjct: 137 --IEAMRSLRPQQKFLELVHRLDKETSGVLLIAKKRRALKHLHDQLRYKKMQKDYMALVR 194

Query: 175 GHLDLKEGIIED---SIDLNENGIKRELSNFGKISKTKYKVIEELKNASVLEINLLTGRT 231
           G     + +I      + L        ++  GK S+T++K+++  + A++++ + +TGRT
Sbjct: 195 GEWQNHDKVINAPLLKLTLKSGERIVRVNQEGKPSETRFKIMQRYQGATLVQASPVTGRT 254

Query: 232 HQIRVHLSSTGNYIIGDTLYGE-------TSKLIDRQALHSHILRFIHPITKEKIEIISK 284
           HQIRVH    G+ I  D  Y E           ++R  LH+  L+F HP+++E +++ + 
Sbjct: 255 HQIRVHCQYAGHPIACDEKYSEQKFDDAMRELGLNRLFLHAAQLKFTHPVSEEVMQVKAP 314

Query: 285 LPDDMKNLIKNL 296
           L   +++L+  L
Sbjct: 315 LDKALQDLLNKL 326