Pairwise Alignments

Query, 297 a.a., RluA family pseudouridine synthase from Methanococcus maripaludis S2

Subject, 331 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase from Klebsiella michiganensis M5al

 Score =  103 bits (256), Expect = 7e-27
 Identities = 78/301 (25%), Positives = 153/301 (50%), Gaps = 24/301 (7%)

Query: 17  AGNKLIDVLKDNFE-LSNKMIKKFDKENKIFVNSKNISLKSKLKENETVSVE----IDYG 71
           AG ++ + L+   + +   MI +  ++ ++ VN K +  + KL+  + V +      +  
Sbjct: 32  AGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRVKPEYKLEAGDEVRIPPVRVSEKE 91

Query: 72  INNITPE-----NLTLNVIYEDDDLLIVDKSKNMVVHPTKNVLSGTLANAISNHQKINNQ 126
              ++P       L   ++YEDD +L+++K     VH      SG     I   + +  +
Sbjct: 92  EEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGG----SGLSFGVIEGLRALRPE 147

Query: 127 NYKIRFVNRLDMDTTGLLIVAKNSYSHQQLAKQMDEGILEKIYIAVVNGHLDLKEGIIED 186
              +  V+RLD DT+G+L+VAK   + + L +Q+ +  ++K Y+A+V G       +++ 
Sbjct: 148 ARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLRDKGMQKDYLALVRGQWQSHTKVVQA 207

Query: 187 SIDLN--ENGIKR-ELSNFGKISKTKYKVIEELKNASVLEINLLTGRTHQIRVHLSSTGN 243
            +  N  ++G +   ++  GK S+T++KV E   +A+++  + +TGRTHQIRVH    G+
Sbjct: 208 PLLKNILQSGERIVRVNQEGKPSETRFKVEERFTHATLVRCSPVTGRTHQIRVHTQYAGH 267

Query: 244 YIIGDTLYGE-------TSKLIDRQALHSHILRFIHPITKEKIEIISKLPDDMKNLIKNL 296
            I  D  YG+           ++R  LH+  L+F HP + E + + + L + +K  ++ L
Sbjct: 268 PIAFDDRYGDREFDKQLAGTGLNRLFLHAAALKFTHPGSGEIMRVEAPLDNQLKRCLQVL 327

Query: 297 K 297
           +
Sbjct: 328 R 328