Pairwise Alignments

Query, 297 a.a., RluA family pseudouridine synthase from Methanococcus maripaludis S2

Subject, 326 a.a., Ribosomal large subunit pseudouridine synthase D from Enterobacter sp. TBS_079

 Score =  147 bits (371), Expect = 3e-40
 Identities = 101/315 (32%), Positives = 169/315 (53%), Gaps = 25/315 (7%)

Query: 4   QKKILNLTVDSKIAGNKLIDVLKDNF-ELSNKMIKKFDKENKIFVNSKNISL-KSKLKEN 61
           Q+  L  TV     G +L   L + F + S   IK++  + ++ VN K     K K+   
Sbjct: 3   QRVELTATVSENQLGQRLDQALAELFPDYSRSRIKEWILDQRVLVNGKIWDKPKEKVLGG 62

Query: 62  ETVSV--EIDYGINNITPENLTLNVIYEDDDLLIVDKSKNMVVHPTKNVLSGTLANAISN 119
           E V++  EI+  I    P+++ LN++YEDDD+L+++K +++VVHP      GT+ NA+ +
Sbjct: 63  EAVAINAEIEEDIR-FEPQDIPLNIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLH 121

Query: 120 HQKINNQNYKIRFVNRLDMDTTGLLIVAKNSYSHQQLAKQMDEGILEKIYIAVVNGHLDL 179
           +        +   V+RLD DTTGL++VAK   +  +L + +    + + Y AV  GH+  
Sbjct: 122 YYPPIVDVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAVAIGHM-T 180

Query: 180 KEGIIEDSIDLNENGIKR---ELSNFGKISKTKYKVIEELKNASVLEINLLTGRTHQIRV 236
             G +E+ I  + +  KR    +   GK + T Y+++E  +  + L + L TGRTHQIRV
Sbjct: 181 AGGTVEEPI--SRHPTKRTHMSVHPMGKPAVTHYRIMEHFRIHTRLRLRLETGRTHQIRV 238

Query: 237 HLSSTGNYIIGDTLYG--------------ETSKLIDRQALHSHILRFIHPITKEKIEII 282
           H++   + ++GD +YG                 +  DRQALH+ +LR  HPIT  ++E  
Sbjct: 239 HMAHITHPLVGDQVYGGRPRPPKGASDEFISVLRKFDRQALHATMLRLYHPITGIQMEWH 298

Query: 283 SKLPDDMKNLIKNLK 297
           + +P DM +LI  ++
Sbjct: 299 APIPQDMVDLIDAMR 313