Pairwise Alignments

Query, 267 a.a., 16S ribosomal RNA methyltransferase A from Methanococcus maripaludis S2

Subject, 272 a.a., SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase (EC 2.1.1.182) from Pseudomonas fluorescens FW300-N2E2

 Score =  125 bits (313), Expect = 1e-33
 Identities = 80/229 (34%), Positives = 119/229 (51%), Gaps = 9/229 (3%)

Query: 2   RQSKKLGQCFLKDKNFVKKAINRAEITNNDIVLEVGLGEGALTKELAKIAKKVYVIELDE 61
           R  K+ GQ FL D   + + +       +D +LE+G G+GALT+ L     ++ V+ELD+
Sbjct: 8   RARKRFGQNFLHDAGVIDRILRSIRAKPDDRLLEIGPGQGALTEGLLDSGAQLDVVELDK 67

Query: 62  RLKPFADEITAEFENVEIIWSDALKVDLKNLGFN----KIVANLPYQISSPITFKFLEED 117
            L P  ++  A   N  +   DALK D  +L       ++V NLPY IS+P+ F  L   
Sbjct: 68  DLVPILNQQFAGRSNFSLHQGDALKFDFNSLNAAPNSLRVVGNLPYNISTPLIFHLLSNA 127

Query: 118 --FETAVLMYQYEFAKRMAGKPDTKEYSRLSVAVQYNADVEFICKVPPSAFSPKPDVNSA 175
                   M Q E  +R+A  P   ++ RLS+ VQY+  VE +  V P AF+P P V+SA
Sbjct: 128 GLIRDMHFMLQKEVVERLAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNPPPKVDSA 187

Query: 176 IVKLTKREPKYH-VKDEEFFKKVLKAVFQHRNRTIKRA--LIDSSHEIE 221
           IV+L       H  KD    ++V++  F  R +T++    L+ SS EIE
Sbjct: 188 IVRLVPHAVLPHPAKDHRLLERVVREAFNQRRKTLRNTLKLLLSSTEIE 236