Pairwise Alignments

Query, 285 a.a., permease from Methanococcus maripaludis S2

Subject, 458 a.a., Predicted permeases from Pseudomonas stutzeri RCH2

 Score = 50.8 bits (120), Expect = 5e-11
 Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 7/120 (5%)

Query: 168 LMPAIMIGFLISGFMMYFIPKDIILYAL---SNNIMMYFYASVARIFIFLCPNAMIPLIS 224
           L+PA    F+I+G M  +I +  ++  L   S   + +  AS+A   + +C   ++PL  
Sbjct: 80  LLPA----FVIAGAMAVYISQGAVMKHLGPASPKPVAFGVASIAGTLLAVCSCTVLPLFG 135

Query: 225 SVAINGVPKGLILSFLISAPSIGLPMISAMLKVYGKKIALKYVFGVIILGGIIGILVDIL 284
            +   G   G  ++FL S P+I +  I    KV G ++ +    G I+   +IG ++ +L
Sbjct: 136 GIYRRGAGLGAAIAFLYSGPAINVMAIVVTAKVLGAELGIARAVGAIVFALVIGAIMHLL 195



 Score = 50.8 bits (120), Expect = 5e-11
 Identities = 21/79 (26%), Positives = 47/79 (59%)

Query: 60  IASLIGAVLPLCSASGIPVANVMNSKGTNLGTTMSFIVSASSITPLGVMLTYSLLGYEIA 119
           +AS+ G +L +CS + +P+   +  +G  LG  ++F+ S  +I  + +++T  +LG E+ 
Sbjct: 115 VASIAGTLLAVCSCTVLPLFGGIYRRGAGLGAAIAFLYSGPAINVMAIVVTAKVLGAELG 174

Query: 120 VMQILASLVLACSLGIIFY 138
           + + + ++V A  +G I +
Sbjct: 175 IARAVGAIVFALVIGAIMH 193



 Score = 50.4 bits (119), Expect = 7e-11
 Identities = 31/127 (24%), Positives = 64/127 (50%), Gaps = 7/127 (5%)

Query: 166 KNLMPAIMIGFLISGFMMY------FIPKDIILYALSNN-IMMYFYASVARIFIFLCPNA 218
           K +MP ++ G LI+G ++        IP + +++A+ +N       ASV   F++     
Sbjct: 332 KQIMPLLLGGVLIAGMLLGRPGHEGLIPSEWVVWAVGDNSFTSTLLASVLGAFMYFSTLT 391

Query: 219 MIPLISSVAINGVPKGLILSFLISAPSIGLPMISAMLKVYGKKIALKYVFGVIILGGIIG 278
            +P++  +   G+ KG  L+ L++ P++ LP +  +  V G +  + Y   V+++  + G
Sbjct: 392 EVPIVEGLLGAGMGKGPALAILLAGPALSLPNMLVIRTVLGTQKTIVYCSLVVVMATLSG 451

Query: 279 ILVDILL 285
            L   L+
Sbjct: 452 YLYGQLM 458



 Score = 35.0 bits (79), Expect = 3e-06
 Identities = 16/86 (18%), Positives = 46/86 (53%)

Query: 52  DNSKKSIIIASLIGAVLPLCSASGIPVANVMNSKGTNLGTTMSFIVSASSITPLGVMLTY 111
           DNS  S ++AS++GA +   + + +P+   +   G   G  ++ +++  +++   +++  
Sbjct: 369 DNSFTSTLLASVLGAFMYFSTLTEVPIVEGLLGAGMGKGPALAILLAGPALSLPNMLVIR 428

Query: 112 SLLGYEIAVMQILASLVLACSLGIIF 137
           ++LG +  ++     +V+A   G ++
Sbjct: 429 TVLGTQKTIVYCSLVVVMATLSGYLY 454