Pairwise Alignments

Query, 285 a.a., permease from Methanococcus maripaludis S2

Subject, 335 a.a., hypothetical protein from Synechococcus elongatus PCC 7942

 Score = 46.2 bits (108), Expect = 1e-09
 Identities = 30/129 (23%), Positives = 59/129 (45%), Gaps = 4/129 (3%)

Query: 15  LNFFSEAFVYILFGFLMSAYIKVKLKGKLRQKFVHILDNSKKSIIIASLIGAVLPLCSAS 74
           L+   EA  ++L G  +S+ +      K   + +    N     +  SL+G + P C   
Sbjct: 12  LSLLVEALPFLLLGVFLSSLLLCFTNEKALLRILP--KNPLGGALAGSLVGFLFPACECG 69

Query: 75  GIPVANVMNSKGTNLGTTMSFIVSASSITPLGVMLTYSLL--GYEIAVMQILASLVLACS 132
            +PV   +  +G      M F+++A  I P+ +  T+       EI V+++L ++++A  
Sbjct: 70  NVPVTRRLILQGAPPAVAMGFLLAAPVINPIVIWSTWVAFRDQPEIVVLRVLFTMIIATL 129

Query: 133 LGIIFYNDK 141
           +G +F   K
Sbjct: 130 VGWVFSAQK 138



 Score = 35.0 bits (79), Expect = 2e-06
 Identities = 24/108 (22%), Positives = 51/108 (47%), Gaps = 4/108 (3%)

Query: 169 MPAIMIGFLISGFMMYFIPKDIILYALSNNIMMYFYASVARIFIF-LCPNAMIPLISSVA 227
           +P +++G  +S  ++ F  +  +L  L  N +    A     F+F  C    +P+   + 
Sbjct: 19  LPFLLLGVFLSSLLLCFTNEKALLRILPKNPLGGALAGSLVGFLFPACECGNVPVTRRLI 78

Query: 228 INGVPKGLILSFLISAPSIGLPMISAMLKVYGKK---IALKYVFGVII 272
           + G P  + + FL++AP I   +I +    +  +   + L+ +F +II
Sbjct: 79  LQGAPPAVAMGFLLAAPVINPIVIWSTWVAFRDQPEIVVLRVLFTMII 126