Pairwise Alignments

Query, 285 a.a., permease from Methanococcus maripaludis S2

Subject, 474 a.a., permease (RefSeq) from Shewanella loihica PV-4

 Score = 57.0 bits (136), Expect = 8e-13
 Identities = 37/130 (28%), Positives = 69/130 (53%), Gaps = 2/130 (1%)

Query: 11  LEHSLNFFSEAFVYILFGFLMSAYIKVKLKGKLRQKFVHILDNSKKSIIIASLIGAVLPL 70
           L + ++ F ++  ++L G +++  +K+ +     QK   +  +  K+ I A+++GA LPL
Sbjct: 3   LSNFIDLFLDSAPWLLLGLVLAGMLKMFVPMTWMQK--QLGGHGVKTTIKAAVLGAPLPL 60

Query: 71  CSASGIPVANVMNSKGTNLGTTMSFIVSASSITPLGVMLTYSLLGYEIAVMQILASLVLA 130
           CS   IP A  +   G +   T SF+VS        V ++Y LLG  +AV++ +A++  A
Sbjct: 61  CSCGVIPAAVGLRRSGASKAATTSFLVSTPETGIDSVSVSYVLLGPFMAVVRPIAAVTSA 120

Query: 131 CSLGIIFYND 140
              G++   D
Sbjct: 121 IVAGLLVGRD 130



 Score = 41.6 bits (96), Expect = 3e-08
 Identities = 26/113 (23%), Positives = 51/113 (45%), Gaps = 1/113 (0%)

Query: 170 PAIMIGFLISGFMMYFIPKDIILYALSNN-IMMYFYASVARIFIFLCPNAMIPLISSVAI 228
           P +++G +++G +  F+P   +   L  + +     A+V    + LC   +IP    +  
Sbjct: 15  PWLLLGLVLAGMLKMFVPMTWMQKQLGGHGVKTTIKAAVLGAPLPLCSCGVIPAAVGLRR 74

Query: 229 NGVPKGLILSFLISAPSIGLPMISAMLKVYGKKIALKYVFGVIILGGIIGILV 281
           +G  K    SFL+S P  G+  +S    + G  +A+      +    + G+LV
Sbjct: 75  SGASKAATTSFLVSTPETGIDSVSVSYVLLGPFMAVVRPIAAVTSAIVAGLLV 127



 Score = 33.5 bits (75), Expect = 9e-06
 Identities = 36/178 (20%), Positives = 77/178 (43%), Gaps = 20/178 (11%)

Query: 23  VYILFGFLMSAYIKVKLKGKLRQKFVHILDNSKKSIIIASLIGAVLPLCSASGIPVANVM 82
           V++L G   +A ++  + G    K+     +   ++++  LI   + +C+ +  P+A  +
Sbjct: 307 VWLLIGLFFAALVQTYVPGDFMAKW----GDGILAMLVMVLISVPMYICATASTPIAAGL 362

Query: 83  NSKGTNLGTTMSFIVS--ASSITPLGVMLTYSLLGYEIAVMQILASLVLACSLGIIFYND 140
              G + G  + F+++  A++I  LGV+     LG       +   L +A   G++    
Sbjct: 363 LLAGVSPGAVLVFMLAGPATNIATLGVVT--KELGKRALYGYLGGVLGVALVAGVLVNYL 420

Query: 141 KIPFYFEEYDVKAEETFLKVLFKQMKNLMPAIMIGFLISGFMMYFIPKDIILYALSNN 198
              F FE      E+           NL+P++++    SG ++  +   ++L  L  N
Sbjct: 421 VATFGFEVMPQVGEQ----------HNLLPSLVVN--ASGIILAILMLKVLLAKLPKN 466