Pairwise Alignments

Query, 285 a.a., permease from Methanococcus maripaludis S2

Subject, 338 a.a., permease (RefSeq) from Shewanella loihica PV-4

 Score = 52.0 bits (123), Expect = 2e-11
 Identities = 65/298 (21%), Positives = 122/298 (40%), Gaps = 41/298 (13%)

Query: 14  SLNFFSEAFVYILFGFLMSAYIKVKLKGKLRQKFVHILDNSKKSII---IASLIGAVLPL 70
           +L+FF E    I    ++  Y+   L+  L  + V      K  ++   + +  GA+ P 
Sbjct: 28  ALHFFVEDTSKIFALLVVMIYLIGWLRAALNVERVRDYLAGKPKLLGYGLGAGFGAITPF 87

Query: 71  CSASGIPVANVMNSKGTNLGTTMSFIVSASSITPLGVMLTYSLLGYEIAVMQILASLVLA 130
           CS S IPV     + G  +G TM+F++++  I  + ++L +SLLG +I ++  L  + + 
Sbjct: 88  CSCSSIPVFLGFTTAGIPVGITMAFLLTSPLINEVAILLLFSLLGAKITLLYALTGITIG 147

Query: 131 CSLGIIFYNDKI-------PFYFEEY---------DVKAEETFL------------KVLF 162
              G +   D +       P     Y            A +T+             +  F
Sbjct: 148 MLGGALL--DLLHAERWLQPLAANAYRRGATQTQTTASASDTYTPDESTPGISWRQRHQF 205

Query: 163 KQMKNL------MPAIMIGFLISGFMMYFIPKDIILYALSNNIMMYF-YASVARIFIFLC 215
            + + L         ++IG  I   +  F+P   +   L +        A +  I ++  
Sbjct: 206 AKQETLTIFGRVWKWVIIGVGIGAALHGFVPAGYLEANLGDGQWWSVPIAVLMGIPLYAN 265

Query: 216 PNAMIPLISSVAINGVPKGLILSFLISAPSIGLPMISAMLKVYGKKIALKYVFGVIIL 273
              +IP++ S+ I GVP G  L+F +S  +   P    MLK   +   L  +F ++++
Sbjct: 266 ATGVIPVLESLLIQGVPLGTTLAFCMSTVAASFPEF-VMLKQVMQWRLLALLFALLLV 322



 Score = 43.5 bits (101), Expect = 6e-09
 Identities = 22/70 (31%), Positives = 37/70 (52%)

Query: 215 CPNAMIPLISSVAINGVPKGLILSFLISAPSIGLPMISAMLKVYGKKIALKYVFGVIILG 274
           C  + IP+       G+P G+ ++FL+++P I    I  +  + G KI L Y    I +G
Sbjct: 88  CSCSSIPVFLGFTTAGIPVGITMAFLLTSPLINEVAILLLFSLLGAKITLLYALTGITIG 147

Query: 275 GIIGILVDIL 284
            + G L+D+L
Sbjct: 148 MLGGALLDLL 157