Pairwise Alignments

Query, 285 a.a., permease from Methanococcus maripaludis S2

Subject, 331 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 65.1 bits (157), Expect = 2e-15
 Identities = 63/270 (23%), Positives = 116/270 (42%), Gaps = 31/270 (11%)

Query: 10  SLEHSLNFFSEAFVYILFGFLMSAYIKVKLKGKLRQKFVH-ILDNSKKSI--IIASLIGA 66
           +L  +++FF E    I    L+  Y+   L+  L  + V   L    K +  ++ S+ GA
Sbjct: 24  ALGGAVHFFVEDVSKIFVLLLVMIYVIALLRASLDVERVRDYLAGKNKGVGYLLGSIFGA 83

Query: 67  VLPLCSASGIPVANVMNSKGTNLGTTMSFIVSASSITPLGVMLTYSLLGYEIAVMQILAS 126
           + P CS S IPV     S G  LG T++F++++  I  + V+L  SLLG++  ++ +   
Sbjct: 84  ITPFCSCSSIPVFLGFTSAGIPLGITIAFLITSPLINEVAVLLLMSLLGWKFTLLYVAVG 143

Query: 127 LVLACSLGIIFYNDKIPFYFEEYDVKA------------EETFLKVLFKQMKN------- 167
           + +    G++    K   + + +  +A              T  +VL    ++       
Sbjct: 144 MTVGMLGGVLLDAMKAERWLQSFAAEALLRGRQMAASDVVSTVARVLSLSERHQFAKAEA 203

Query: 168 ------LMPAIMIGFLISGFMMYFIPKDIILYALSNNIMMYFYASVARIFIFLCPNA--M 219
                 +   ++IG  +   +  F+P+  I   L      +       I I L  NA  +
Sbjct: 204 IEIFGRVWKWVIIGVGLGAALHGFVPEGWIEAHLGQG-QWWSVPVAVLIGIPLYSNATGI 262

Query: 220 IPLISSVAINGVPKGLILSFLISAPSIGLP 249
           IP++ S+  NG+P G  L+F +S  +   P
Sbjct: 263 IPVMESLLANGLPIGTTLAFCMSTVAASFP 292



 Score = 41.6 bits (96), Expect = 2e-08
 Identities = 22/83 (26%), Positives = 41/83 (49%)

Query: 202 YFYASVARIFIFLCPNAMIPLISSVAINGVPKGLILSFLISAPSIGLPMISAMLKVYGKK 261
           Y   S+       C  + IP+       G+P G+ ++FLI++P I    +  ++ + G K
Sbjct: 75  YLLGSIFGAITPFCSCSSIPVFLGFTSAGIPLGITIAFLITSPLINEVAVLLLMSLLGWK 134

Query: 262 IALKYVFGVIILGGIIGILVDIL 284
             L YV   + +G + G+L+D +
Sbjct: 135 FTLLYVAVGMTVGMLGGVLLDAM 157



 Score = 30.0 bits (66), Expect = 7e-05
 Identities = 25/126 (19%), Positives = 58/126 (46%), Gaps = 6/126 (4%)

Query: 14  SLNFFSEAFVYILFGFLMSAYIKVKLKGKLRQKFV--HILDNSKKSIIIASLIGAVLPLC 71
           ++  F   + +++ G  + A     L G + + ++  H+      S+ +A LIG  L   
Sbjct: 203 AIEIFGRVWKWVIIGVGLGA----ALHGFVPEGWIEAHLGQGQWWSVPVAVLIGIPLYSN 258

Query: 72  SASGIPVANVMNSKGTNLGTTMSFIVSASSITPLGVMLTYSLLGYEIAVMQILASLVLAC 131
           +   IPV   + + G  +GTT++F +S  + +    +L   ++ + +  + ++  L    
Sbjct: 259 ATGIIPVMESLLANGLPIGTTLAFCMSTVAASFPEFILLKQVMQWRLLALLLVVLLTAFT 318

Query: 132 SLGIIF 137
            +G +F
Sbjct: 319 LVGWMF 324