Pairwise Alignments

Query, 285 a.a., permease from Methanococcus maripaludis S2

Subject, 491 a.a., hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 60.5 bits (145), Expect = 7e-14
 Identities = 37/130 (28%), Positives = 70/130 (53%), Gaps = 2/130 (1%)

Query: 11  LEHSLNFFSEAFVYILFGFLMSAYIKVKLKGKLRQKFVHILDNSKKSIIIASLIGAVLPL 70
           L + ++ F ++  ++L G +++  +KV +     QK   +  +  K+++ A+L+GA LPL
Sbjct: 4   LNNFIDLFLDSAPWLLLGLVLAGLLKVFVPMAWMQK--QLGGHGFKTVVKAALLGAPLPL 61

Query: 71  CSASGIPVANVMNSKGTNLGTTMSFIVSASSITPLGVMLTYSLLGYEIAVMQILASLVLA 130
           CS   IP A  +   G +   T SF+VS        V ++Y LLG  +A+++ +A++  A
Sbjct: 62  CSCGVIPAAVGLRRSGASKAATTSFLVSTPETGVDSVTVSYVLLGPFMAIVRPIAAITSA 121

Query: 131 CSLGIIFYND 140
              G++   D
Sbjct: 122 ILAGLLVGRD 131



 Score = 37.7 bits (86), Expect = 5e-07
 Identities = 25/113 (22%), Positives = 50/113 (44%), Gaps = 1/113 (0%)

Query: 170 PAIMIGFLISGFMMYFIPKDIILYALSNN-IMMYFYASVARIFIFLCPNAMIPLISSVAI 228
           P +++G +++G +  F+P   +   L  +       A++    + LC   +IP    +  
Sbjct: 16  PWLLLGLVLAGLLKVFVPMAWMQKQLGGHGFKTVVKAALLGAPLPLCSCGVIPAAVGLRR 75

Query: 229 NGVPKGLILSFLISAPSIGLPMISAMLKVYGKKIALKYVFGVIILGGIIGILV 281
           +G  K    SFL+S P  G+  ++    + G  +A+      I    + G+LV
Sbjct: 76  SGASKAATTSFLVSTPETGVDSVTVSYVLLGPFMAIVRPIAAITSAILAGLLV 128



 Score = 27.7 bits (60), Expect = 5e-04
 Identities = 22/115 (19%), Positives = 52/115 (45%), Gaps = 13/115 (11%)

Query: 23  VYILFGFLMSAYIKVKLKGKLRQKFVHILDNSKKSIIIASLIGAVLPLCSASGIPVANVM 82
           +++L G   +A ++  +      K+     +   ++++  L+   + +C+ +  P+A  +
Sbjct: 323 LWLLVGLFFAALVQTYVPADFLSKW----GDGLLAMLVMVLVSVPMYICATASTPIAAGL 378

Query: 83  NSKGTNLGTTMSFIVS--ASSITPLGVM-------LTYSLLGYEIAVMQILASLV 128
              G + G  + F+++  A++I  LGV+         Y  +G  I V     +LV
Sbjct: 379 LLAGVSPGAVLVFMLAGPATNIATLGVVTKELGKRALYGYIGGVIGVALAAGALV 433