Pairwise Alignments

Query, 285 a.a., permease from Methanococcus maripaludis S2

Subject, 460 a.a., permease, putative (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 55.8 bits (133), Expect = 2e-12
 Identities = 26/113 (23%), Positives = 61/113 (53%)

Query: 172 IMIGFLISGFMMYFIPKDIILYALSNNIMMYFYASVARIFIFLCPNAMIPLISSVAINGV 231
           +++G +++  +   IP D+     ++ I       V  I +++C  A  P+ ++ A+ G+
Sbjct: 288 LLLGVVLAAVITILIPDDLFSGTFASGIGGILLMMVVGIPLYVCATASTPIAAAFALKGI 347

Query: 232 PKGLILSFLISAPSIGLPMISAMLKVYGKKIALKYVFGVIILGGIIGILVDIL 284
             G  L FL++ P+  +  I+ + ++ G+K A+ YV  + ++   +G+ V++L
Sbjct: 348 SPGAALVFLLAGPATNVATITVVARMLGRKAAVIYVAVIGVMSVALGLAVNML 400



 Score = 54.3 bits (129), Expect = 5e-12
 Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 2/123 (1%)

Query: 14  SLNFFSEAFVYILFGFLMSAYIKVKLKGKLRQKFVHILDNSKKSIIIASLIGAVLPLCSA 73
           S +   EA  Y+LFGF ++  +K  +      +  H+       +  A+L G  LPLCS 
Sbjct: 20  SWDILLEAAPYVLFGFFVAGLLKAYVPASFVAR--HLGRGHVGPVFKAALFGIPLPLCSC 77

Query: 74  SGIPVANVMNSKGTNLGTTMSFIVSASSITPLGVMLTYSLLGYEIAVMQILASLVLACSL 133
             IP A  +  +G + G T SF+++        + +T++LL   + V +  A+L+ + + 
Sbjct: 78  GVIPAAAGLRQQGASKGATTSFLIATPETGVDSMAVTWALLDPVMTVARPFAALLTSVAA 137

Query: 134 GII 136
           G++
Sbjct: 138 GLM 140



 Score = 47.8 bits (112), Expect = 5e-10
 Identities = 26/115 (22%), Positives = 54/115 (46%), Gaps = 1/115 (0%)

Query: 170 PAIMIGFLISGFMMYFIPKDIILYALSN-NIMMYFYASVARIFIFLCPNAMIPLISSVAI 228
           P ++ GF ++G +  ++P   +   L   ++   F A++  I + LC   +IP  + +  
Sbjct: 29  PYVLFGFFVAGLLKAYVPASFVARHLGRGHVGPVFKAALFGIPLPLCSCGVIPAAAGLRQ 88

Query: 229 NGVPKGLILSFLISAPSIGLPMISAMLKVYGKKIALKYVFGVIILGGIIGILVDI 283
            G  KG   SFLI+ P  G+  ++    +    + +   F  ++     G++VD+
Sbjct: 89  QGASKGATTSFLIATPETGVDSMAVTWALLDPVMTVARPFAALLTSVAAGLMVDL 143



 Score = 40.0 bits (92), Expect = 1e-07
 Identities = 23/112 (20%), Positives = 55/112 (49%), Gaps = 3/112 (2%)

Query: 24  YILFGFLMSAYIKVKLKGKLRQKFVHILDNSKKSIIIASLIGAVLPLCSASGIPVANVMN 83
           ++L G +++A I + +   L   F     +    I++  ++G  L +C+ +  P+A    
Sbjct: 287 WLLLGVVLAAVITILIPDDL---FSGTFASGIGGILLMMVVGIPLYVCATASTPIAAAFA 343

Query: 84  SKGTNLGTTMSFIVSASSITPLGVMLTYSLLGYEIAVMQILASLVLACSLGI 135
            KG + G  + F+++  +     + +   +LG + AV+ +    V++ +LG+
Sbjct: 344 LKGISPGAALVFLLAGPATNVATITVVARMLGRKAAVIYVAVIGVMSVALGL 395