Pairwise Alignments

Query, 573 a.a., ATP-dependent DNA ligase from Methanococcus maripaludis S2

Subject, 655 a.a., ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD from Pseudomonas fluorescens FW300-N2E2

 Score = 47.4 bits (111), Expect = 2e-09
 Identities = 55/253 (21%), Positives = 116/253 (45%), Gaps = 38/253 (15%)

Query: 248 QFETKYDGARVQVHKSNGDVKIYSRRLENITNSVPELVEEIKKLDIDNIILEGECVAMDL 307
           ++E ++ G R+      G+V++++R  ++ T  +    + +   ++ +  L+GE V +D 
Sbjct: 50  RYEVQFHGYRLLARIEQGEVRLFNRNHQDWTERLKLHADALAGWNLGDSWLDGELVLLD- 108

Query: 308 DSGKPRPFQDILRRFRRKYNIDKMAEKIALRIYFFDVLYYNR-GLIDTPLKTRREILEKL 366
           ++G+           R+ ++I +  + +    + FD  + N   L   P++ RR  L+K 
Sbjct: 109 ETGR-----SDFAALRQAFDISRTVDML---YFLFDAPFLNGVDLRQAPVEERRAALKKA 160

Query: 367 FGTNNWDSELEKIKKEIFSSKMLFS-SFKLNSGDPNLVKEFFNWSLSIGHEGIMIKNPDA 425
            G N              S ++ FS SF   S  P+   + F  ++++  + ++ K   +
Sbjct: 161 LGNN-------------ASKRLRFSESF---SASPH---DMFESAIALALDSVVGKRVGS 201

Query: 426 PYTPGSRVKTMYKVKPTLENLDVVV--TRAKIGMGKRKDWYGSYELSVKDNDGNLHVIGN 483
           PY    R     K+K  L    V+V  TR +     R+  +G+  L+V    G ++  G 
Sbjct: 202 PYR-SQRSADWVKLKCRLRQAFVIVGFTRPQ----GRRSGFGALLLAVNGPSGLVYA-GR 255

Query: 484 VGSGLTEDDLEKL 496
           VG+G ++  +++L
Sbjct: 256 VGTGFSQTQIQQL 268