Pairwise Alignments

Query, 823 a.a., DNA topoisomerase I from Methanococcus maripaludis S2

Subject, 655 a.a., DNA topoisomerase III (EC 5.99.1.2) in PFGI-1-like cluster from Pseudomonas fluorescens FW300-N2E2

 Score =  158 bits (399), Expect = 1e-42
 Identities = 163/681 (23%), Positives = 283/681 (41%), Gaps = 81/681 (11%)

Query: 4   LIICEKPNVAKKIAEALGKPKKKSHNSVPYYELERNGESIVVASAVGHLYTLQEKTKTKF 63
           L +CEKP+  + IA+ LG  ++     +        G    V   +GHL  L+      +
Sbjct: 3   LFLCEKPSQGRDIAKVLGASRRGDGCLI--------GRETTVTWCIGHL--LETAPPEAY 52

Query: 64  GD-YPVYDINWVPASTLDEKKYIQKYIDALKKVSK----DANKFYVATDWDIEGELIGYH 118
           GD Y  + ++ +P      +  ++    A  K+ K    +A    +ATD D EGE+I   
Sbjct: 53  GDQYKTWSLDHLPIIPAQWRVEVKPKTVAQFKIIKHLLSEATTVVIATDADREGEMIARE 112

Query: 119 ALNFSCGQKNAHRLRFSSLTKKEILKAYEN--PNEIDFGLVDAGDSRHKIDWYFGINVSR 176
            L     + +  RL  S+L +  I KA  +   ++  F L  +  +R + DW  G+N+SR
Sbjct: 113 LLEICNYRGSVERLWLSALNEASIRKALSSLKSSQETFPLYHSALARSRADWLIGMNLSR 172

Query: 177 ALMQAVSSVKRWKTLSTGRVQGPALAFLVDKELEIRNFVPTPYWVLEALLDN---DLIAV 233
                         LS GRVQ P L  +V+++  I +FV  PYWV++  L +     IA 
Sbjct: 173 LFTLLGRRAGYDGVLSVGRVQTPTLRLVVERDRAIASFVSVPYWVVDVHLSSMGQPFIAS 232

Query: 234 --------HELEKFWDEEQANKAYEKVKGQKQATVSDVKKSMKTIPPNPPFDLGALQREA 285
                    E  +   +  A++  + +   K ATV  ++       P  PFDL  LQ   
Sbjct: 233 WIPPNSGRDEAGRCLQQALASQTLQALSSSKTATVVSLQTEHLREAPPLPFDLSTLQEVC 292

Query: 286 HNMFRFSPKKTQEVAQKLYEKGYC-SYPRTSSQKLPDDKAYMDEVLKNLSKNKNYKPYIE 344
                   ++T   AQ LYE     SYPR+  + LP+  +  +EV           P + 
Sbjct: 293 SRKLGLGAQETLNNAQALYETHKATSYPRSDCRYLPE--SMFNEVAAVFDALLRMDPALR 350

Query: 345 TILNENRKPISGKNDDPAHPAVHAVDVPKE------KLPDDELKLYELIARRTIALYWDN 398
             L    + +  +  + A    H   +P        ++ + E ++YELI    +A +  +
Sbjct: 351 PALGGVDQSLRSRAWNDAKITAHHAIIPTTEPANLGRMSEQERQVYELIRSHYLAQFLPH 410

Query: 399 AKREYSKINLDINGETFKLSGSRTVEEGWHEIYYYTKFDEVE------LPELKKNDVINV 452
            + + +++ L+   E     G + + +GW  +      D+        LP L++     V
Sbjct: 411 HEFDRTEVELECGAERLTAVGKQILVQGWKGLLSDNPDDDEPSQKSQVLPALQQGRQCAV 470

Query: 453 NNINFEAKETKPPKRYTMASIIKELE-----------KRKL------GTKATRADILEKL 495
           +++  ++  T  PK  T   +IK ++           K+KL      GT+ATRA I++ L
Sbjct: 471 DDVELKSMRTAAPKPLTEGDLIKAMKNVAKLVNDPRLKQKLRDTTGIGTEATRAGIIKGL 530

Query: 496 TKRGYVI-EDGSLTVTDLGIGVTETLRKYCPEIVEET-LTRDLEDKLELIQDKKIKKEEV 553
             RGY++ +  +LT +        TL +  P  V +  +T   E  L+ I+  ++  +  
Sbjct: 531 IDRGYLLKKKRALTAS----AAAHTLIEAVPAAVADPGMTAIWEQALDEIEAGRLTLDTF 586

Query: 554 IQETKDKLTKILGEFRLKEKEIGTELVDKLDSTNRSLQIIGKCKCGGDMIIIRTKGKK-R 612
           + +    +T+++         +  E        N S+              +R KGK   
Sbjct: 587 VAKQAHWITQLISNCGALTLSVPVEAGPVCPLCNASM--------------LRRKGKSGP 632

Query: 613 FVGCSNYPDCEVTFPLPQKGR 633
           F  CS YPDC+ T P+ +  R
Sbjct: 633 FWSCSQYPDCKGTVPISKGTR 653



 Score = 42.0 bits (97), Expect = 1e-07
 Identities = 16/35 (45%), Positives = 21/35 (60%)

Query: 729 CPKCGSDLYKRKGRFGEFIGCSNYPKCRHTEKIDK 763
           CP C + + +RKG+ G F  CS YP C+ T  I K
Sbjct: 616 CPLCNASMLRRKGKSGPFWSCSQYPDCKGTVPISK 650



 Score = 36.2 bits (82), Expect = 6e-06
 Identities = 14/31 (45%), Positives = 17/31 (54%)

Query: 683 ICPKCGNKLLIKKGPYGVFRGCENYPKCKYT 713
           +CP C   +L +KG  G F  C  YP CK T
Sbjct: 615 VCPLCNASMLRRKGKSGPFWSCSQYPDCKGT 645