Pairwise Alignments

Query, 823 a.a., DNA topoisomerase I from Methanococcus maripaludis S2

Subject, 870 a.a., DNA topoisomerase I (EC 5.99.1.2) from Pseudomonas fluorescens FW300-N2E2

 Score =  244 bits (624), Expect = 1e-68
 Identities = 210/725 (28%), Positives = 329/725 (45%), Gaps = 77/725 (10%)

Query: 86  QKYIDALKKVSKDANKFYVATDWDIEGELIGYHALNFSCGQKNAH-RLRFSSLTKKEILK 144
           +K I+ L++++KDA+  Y+ATD D EGE I +H      G  + + R+ F+ +TKK I +
Sbjct: 97  EKVIEELRRLAKDADTIYLATDLDREGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQE 156

Query: 145 AYENPNEIDFGLVDAGDSRHKIDWYFGINVSRALMQAVSSVKRWKTLSTGRVQGPALAFL 204
           A+  P E+D   V+A  +R  +D   G  VS  L   ++     + LS GRVQ  A+  +
Sbjct: 157 AFSQPGELDIDRVNAQQARRFLDRVVGYMVSPLLWAKIA-----RGLSAGRVQSVAVKLV 211

Query: 205 VDKELEIRNFVPTPYWVLEALLDNDLIAVHELE---------KFWDEEQANKAYEKVKGQ 255
           V++E EIR F+P  YW + A L     A    +         K  +E QA  A EK+K  
Sbjct: 212 VEREREIRAFIPEEYWEVHADLGTAKGATVRFDVAREKGEAFKPLNEAQAMAALEKLKAS 271

Query: 256 KQATVSDVKKSMKTIPPNPPFDLGALQREAHNMFRFSPKKTQEVAQKLYEKGYCSYPRTS 315
             + V    K   +  P+ PF    LQ+ A N   F  KKT  +AQ+LYE GY +Y RT 
Sbjct: 272 SYSIVKREDKPTSS-KPSAPFITSTLQQAASNRLGFGVKKTMMMAQRLYEAGYITYMRTD 330

Query: 316 SQKLPDDKAYMDEVLKNLSKNKNYKPYIETILNENRKPISGKNDDPAHPAVHAVDVPKEK 375
           S  L  D   M          K Y P    + +      S +    AH A+   D   E 
Sbjct: 331 STNLSADAVAMARTYIESEFGKKYLPDTPNVYS------SKEGAQEAHEAIRPSDANTEP 384

Query: 376 -----LPDDELKLYELIARRTIALYWDNAKREYSKINLDINGETFKLSGSRTVEEGWHEI 430
                +  D  +LYELI R+ +A     A+   + +++       +  G     +G+  +
Sbjct: 385 SKLSGMERDAERLYELIWRQFLACQMLPAQYLSTTVSVGAGDFELRAKGRILKFDGYTRV 444

Query: 431 Y-YYTK-FDEVELPELKKNDVINVNNINFEAKETKPPKRYTMASIIKELEKRKLGTKATR 488
               TK  D+  LP++ + DV+ +  ++     TKPP RY+ AS++KE+EKR +G  +T 
Sbjct: 445 MPQITKPGDDDVLPDMAQGDVMKLIKLDPTQHFTKPPARYSEASLVKEMEKRGIGRPSTY 504

Query: 489 ADILEKLTKRGYV-IEDGSLTVTDLGIGVTETLRKYCPEIVEETLTRDLEDKLELIQDKK 547
           A I+  +  RGYV + +       +G  VTE L +    +++   T  +E+ L+ +   +
Sbjct: 505 AAIISTIQDRGYVALHNRRFYSEKMGDIVTERLSESFSNLMDYGFTAGMEENLDDVAQGE 564

Query: 548 IKKEEVIQETKDKLTKILGEFRLKEKEIGTELVDKLDSTNRSLQIIG---KCKCGGDMII 604
                  ++ K+ L +  G+F+ K      E+ +  DS  R+ Q +     C   G  + 
Sbjct: 565 -------RDWKNVLDEFYGDFKKK-----LEVAESPDSGMRANQPVMTDIPCLTCGRPMQ 612

Query: 605 IRTKGKKRFVGCSNY-----PDCEVTFPLPQKGRIKVLNE---------------VCEKC 644
           IRT     F+GCS Y       C+ T  L     I   +E               +C   
Sbjct: 613 IRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESLVLRGKHRCPICSTA 672

Query: 645 QNPVIGLDRIKICV---NPDCSTRISEEDKKEIEKAEKEEKICPKCGNKLLIKKGPYGVF 701
            +  +  ++ K+ +   NPDC+    EE    I+  E     C KCG+++ +K G +G F
Sbjct: 673 MDAYLLDEKRKLHICGNNPDCAGYEIEEGTYRIKGYEGPSLECDKCGSEMQLKTGRFGKF 732

Query: 702 RGCENYPKCKYTEKL--NGESNEKEIVG------KCPKCGSDLYKRKGRFGEFIGCSNYP 753
            GC N P CK T KL  +G++   ++        KC K       R G  G F+  S +P
Sbjct: 733 FGCTN-PTCKNTRKLLKSGDAAPPKMDPVKMPELKCEKVNDTYILRDGASGLFLAASQFP 791

Query: 754 KCRHT 758
           K R T
Sbjct: 792 KNRET 796