Pairwise Alignments

Query, 823 a.a., DNA topoisomerase I from Methanococcus maripaludis S2

Subject, 648 a.a., DNA topoisomerase III (EC 5.99.1.2) from Pseudomonas fluorescens FW300-N2E2

 Score =  155 bits (393), Expect = 5e-42
 Identities = 151/598 (25%), Positives = 253/598 (42%), Gaps = 58/598 (9%)

Query: 4   LIICEKPNVAKKIAEALGKPKKKSHNSVPYYELERNGESIVVASAVGHLYTLQ--EKTKT 61
           L +CEKP+ AK IA  LG  ++     +        G  I V   +GHL      +    
Sbjct: 3   LYLCEKPSQAKDIAAVLGATRRGDGCWL--------GPGITVTWCIGHLLETAPPDAYDA 54

Query: 62  KFGDYPVYDINWVPAS-TLDEKKYIQKYIDALKKVSKDANKFYVATDWDIEGELIGYHAL 120
           ++  + + D+  VPA   +  K        A+K++  +A +  +ATD D EGE+I    +
Sbjct: 55  RYKRWVLTDLPIVPAQWKMTVKPKTASQYKAVKRLLGEAKELVIATDADREGEMIARELV 114

Query: 121 NFSCGQKNAHRLRFSSLTKKEILKAYE--NPNEIDFGLVDAGDSRHKIDWYFGINVSRAL 178
                +    RL  S+L +  I KA     P    F L  +   R + DW  G+N+SR  
Sbjct: 115 EHCRYRGPIRRLWLSALDEASIRKALAALKPGAETFNLYHSALGRSRADWLIGMNMSRLF 174

Query: 179 MQAVSSVKRWKTLSTGRVQGPALAFLVDKELEIRNFVPTPYWVLEALLDN---------- 228
                       L  GRVQ P L  +VD++  I +FVP  YW ++  L +          
Sbjct: 175 TLLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIADFVPVAYWAIDVQLSHEGMAFTAQWR 234

Query: 229 -DLIAVHELEKFWDEEQANKAYEKVKGQKQATVSDVKKSMKTIPPNPPFDLGALQREAHN 287
            D  A  + E+  ++  A  A + ++    A    V+          PFDLG LQ     
Sbjct: 235 ADPDACDDQERCLNQALARDAAQAMRNAATARTLKVRTERLREAAPLPFDLGTLQEVCSK 294

Query: 288 MFRFSPKKTQEVAQKLYEK-GYCSYPRTSSQKLP-DDKAYMDEVLKNLSK-NKNYKPYIE 344
                 ++T ++AQ LYE     +YPR+    LP    +    +L  L++ + +  P  E
Sbjct: 295 KLGLGAQETLDIAQSLYETYKLITYPRSDCGFLPLSQHSEAPAILAALAQADPSLAPLRE 354

Query: 345 TILNENRKPISGKNDDPAHPAVHAVDVPK--EKLPDDELKLYELIARRTIALYWDNAKRE 402
            +  + +          AH  +      K  +KL   +  +Y LI  R +A +  N + +
Sbjct: 355 HLQPQRKSRAWNDAKVSAHHGIIPTAAAKNLDKLAGKQRAVYTLIRARYLAQFLPNHEYD 414

Query: 403 YSKINLDINGETFKLSGSRTVEEGWH----EIYYYTKFDEV----ELPELKKNDVINVNN 454
            ++ + D  G+  +  G + VE GW     E     K  E      LP L +     V+ 
Sbjct: 415 RTQADFDCAGQALRAVGKQIVEPGWKRALPEALAPAKGREAPAPQTLPALAEGRDCTVDE 474

Query: 455 INFEAKETKPPKRYTMASIIKELE-----------KRKL------GTKATRADILEKLTK 497
           +  +   T+PPK +T   +IK ++           K+KL      GT+ATRA I++ L  
Sbjct: 475 VKPKDLWTQPPKPFTEGDLIKAMKNVAKLVEDPLLKQKLKDTTGIGTEATRASIIQGLLD 534

Query: 498 RGYVIEDG-SLTVTDLGIGVTETLRKYCPEIVEETLTRDLEDKLELIQDKKIKKEEVI 554
           RGY++++G +L+ T     + + + +    I +   T   E  L+++Q  ++  EE +
Sbjct: 535 RGYLVKNGKALSATPAAFSLIDAVPR---AIADPGTTAIWEQALDMVQSGEMSLEEFV 589