Pairwise Alignments

Query, 823 a.a., DNA topoisomerase I from Methanococcus maripaludis S2

Subject, 516 a.a., DNA topoisomerase III (EC 5.99.1.2) in PFGI-1-like cluster from Pseudomonas fluorescens FW300-N2E2

 Score =  138 bits (348), Expect = 7e-37
 Identities = 123/455 (27%), Positives = 190/455 (41%), Gaps = 43/455 (9%)

Query: 4   LIICEKPNVAKKIAEALGKPKKKSHNSVPYYELERNGESIVVASAVGHLY------TLQE 57
           L +CEKP+  K IA  LG  ++ S            G  I V   +GHL       T  E
Sbjct: 26  LFLCEKPSQGKDIARVLGARQRGSGCF--------KGVGISVTWCIGHLVEAAPPETYDE 77

Query: 58  KTKTKFGDY-PVYDINW---VPASTLDEKKYIQKYIDALKKVSKDANKFYVATDWDIEGE 113
           + K    D+ P+  I+W   V A+T  + K +       K++    ++  +ATD D EGE
Sbjct: 78  RFKQWSLDHLPILPISWRVRVKANTAAQYKIV-------KQLLAQTSELVIATDADREGE 130

Query: 114 LIGYHALNFSCGQKNAHRLRFSSLTKKEILKAYENPNEIDF--GLVDAGDSRHKIDWYFG 171
           +I    L     + +  RL  S+L    I KA     + +    L  +  +R + DW  G
Sbjct: 131 MIAREVLELCQYRGSIQRLWLSALNDASIRKALSQLRQAEETQSLYHSALARSRADWLIG 190

Query: 172 INVSRALMQAVSSVKRWKTLSTGRVQGPALAFLVDKELEIRNFVPTPYWVLEALLD---- 227
           +N+SR              LS GRVQ P L  +VD++ EI  FVP PYWV++  L+    
Sbjct: 191 MNMSRLFTLLGRQAGLNGVLSVGRVQTPTLRLVVDRDREIERFVPRPYWVIQVKLEVLGQ 250

Query: 228 -------NDLIAVHELEKFWDEEQANKAYEKVKGQKQATVSDVKKSMKTIPPNPPFDLGA 280
                      A  E  +   +  A +A +  K    A V +V+       P  PFDL  
Sbjct: 251 AFTAQWAAPDSATDEAGRCIRQAIALQAQQSFKATGVAQVLEVETQRTREAPPLPFDLNT 310

Query: 281 LQREAHNMFRFSPKKTQEVAQKLYEKGYC-SYPRTSSQKLPDDKAYMDEVL--KNLSKNK 337
           LQ        +  ++T ++AQ LYE     +YPRT S  LP+      E +    +  + 
Sbjct: 311 LQEVCSRRLGYGVQETLDIAQSLYETHKATTYPRTDSGYLPESMLLEAEAVFAALIKSDP 370

Query: 338 NYKPYIETILNENRKPISGKNDDPAHPAVHAVDVPKEK--LPDDELKLYELIARRTIALY 395
              P ++++    R      +   AH  +     P ++  L + E  +YELI  R +A +
Sbjct: 371 GVGPLVQSVDFTLRSRAWNDSQVSAHHGIIPTLEPFDRLALSERECAVYELIRARYLAQF 430

Query: 396 WDNAKREYSKINLDINGETFKLSGSRTVEEGWHEI 430
               + + + + L       K  G   VE GWH +
Sbjct: 431 LPPHEYDRTAVQLTCGNHVLKAHGKHVVESGWHRV 465