Pairwise Alignments

Query, 823 a.a., DNA topoisomerase I from Methanococcus maripaludis S2

Subject, 867 a.a., DNA topoisomerase I, bacterial from Pseudomonas stutzeri RCH2

 Score =  251 bits (640), Expect = 2e-70
 Identities = 237/816 (29%), Positives = 366/816 (44%), Gaps = 88/816 (10%)

Query: 4   LIICEKPNVAKKIAEALGKPKKKSHNSVPYYELERNGESIV-------VASAVGHLYTLQ 56
           L+I E P  AK I + LG       +     +L  +G +          A+A   + + +
Sbjct: 5   LVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSANKEPVKRGKAAAAEAPVLSPK 64

Query: 57  EKTK----TKFGDYPVYDINWVPASTLDEKKYIQKYIDALKKVSKDANKFYVATDWDIEG 112
           EK K    T+ G  P +   W     +   K  +K I+ L++++K+A+  Y+ATD D EG
Sbjct: 65  EKAKRQLITRMGVDPEH--GWKAKYEILPGK--EKVIEELRRLAKEADTIYLATDLDREG 120

Query: 113 ELIGYHALNFSCGQKNAH-RLRFSSLTKKEILKAYENPNEIDFGLVDAGDSRHKIDWYFG 171
           E I +H      G  + + R+ F+ +TKK I +A+  P ++D   V+A  +R  +D   G
Sbjct: 121 EAIAWHLRESIGGDDSRYKRVVFNEITKKAIQEAFSKPGDLDLNRVNAQQARRFLDRVVG 180

Query: 172 INVSRALMQAVSSVKRWKTLSTGRVQGPALAFLVDKELEIRNFVPTPYWVLEALLDNDLI 231
             VS  L   ++     + LS GRVQ  A+  +V++E EIR FVP  YW + A L +   
Sbjct: 181 YMVSPLLWAKIA-----RGLSAGRVQSVAVKLVVEREREIRAFVPEEYWEVHADLASAQQ 235

Query: 232 AVHELE---------KFWDEEQANKAYEKVKGQKQATVSDVKKSMKTIPPNPPFDLGALQ 282
           A    E         K  +E QAN A EK+KG K + VS  +    +  P+ PF    LQ
Sbjct: 236 AKVRFEVARENGEAFKPLNEAQANAALEKLKGAKYS-VSKREDKPTSSKPSAPFITSTLQ 294

Query: 283 REAHNMFRFSPKKTQEVAQKLYEKGYCSYPRTSSQKLPDDKAYMDEVLKNLSKNKNYKPY 342
           + A N   F  KKT  +AQ+LYE GY +Y RT S  L  D   M            Y P 
Sbjct: 295 QAASNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADAIGMVRGFIEGEFGDKYLPE 354

Query: 343 IETILNENRKPISGKNDDPAHPAVHAVDVPKEK-----LPDDELKLYELIARRTIALYWD 397
              + +      S +    AH A+   DV         +  D  +LYELI R+ +A    
Sbjct: 355 KPNVYS------SKEGAQEAHEAIRPSDVNLRPTQLSGMERDAERLYELIWRQFVACQMP 408

Query: 398 NAKREYSKINLDINGETFKLSGSRTVEEGWHEIY-YYTKFDEVE-LPELKKNDVINVNNI 455
            A+   + + +       +  G     +G+ ++    +K  E + LPE+ K D + +  +
Sbjct: 409 PAQYLSTSVTVAAGDFELRAKGRILKFDGYTKVMPQQSKAGEDDVLPEMNKGDDMKLLKL 468

Query: 456 NFEAKETKPPKRYTMASIIKELEKRKLGTKATRADILEKLTKRGYV-IEDGSLTVTDLGI 514
           +     TKPP RY+ AS++KE+EKR +G  +T A I+  +  RGYV + +       +G 
Sbjct: 469 DPSQHFTKPPARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVSLHNRRFYSEKMGD 528

Query: 515 GVTETLRKYCPEIVEETLTRDLEDKLELIQDKKIKKEEVIQETKDKLTKILGEFRLKEKE 574
            VTE L +    +++   T  +E+ L+ +   +       ++ K  L +  G+FR K+ E
Sbjct: 529 IVTERLSESFNNLMDYGFTAGMEEHLDDVAQGE-------RDWKHVLDEFYGDFR-KKLE 580

Query: 575 IGTELVDKLDSTNRSLQIIGKCKCGGDMIIIRTKGKKRFVGCSNY-----PDCEVTFPLP 629
           +     + + +   +L  I  CK  G  ++IRT     F+GCS Y       C+ T  L 
Sbjct: 581 VAEASENGMRANQPTLTDI-PCKVCGRPMMIRTASTGVFLGCSGYSLPPKERCKSTVNLV 639

Query: 630 QKGRIKVLNEVCEKCQNPVIGLDRIKICV-------------------NPDCSTRISEED 670
               I   +E  E     ++G  R  IC                    NPDCS    E+ 
Sbjct: 640 PGDEIAADDE-GESESRVLLGKHRCPICSTAMDAYLLDETQKLHICGNNPDCSGYEIEKG 698

Query: 671 KKEIEKAEKEEKICPKCGNKLLIKKGPYGVFRGCENYPKCKYTEKL--NGESNEKEIVG- 727
           +  I+  E     C KCG+++ +K G +G F GC N  +CK T KL  NGE+   ++   
Sbjct: 699 QYRIKGYEGPSLECDKCGSEMQLKTGRFGKFFGCTN-AECKNTRKLLKNGEAAPPKMDAV 757

Query: 728 -----KCPKCGSDLYKRKGRFGEFIGCSNYPKCRHT 758
                KC K       R G  G F+  S +PK R T
Sbjct: 758 KMPELKCEKVDDTYVLRDGASGLFLAASQFPKNRET 793