Pairwise Alignments

Query, 823 a.a., DNA topoisomerase I from Methanococcus maripaludis S2

Subject, 646 a.a., DNA topoisomerase III, bacteria and conjugative plasmid from Pseudomonas stutzeri RCH2

 Score =  157 bits (397), Expect = 2e-42
 Identities = 155/618 (25%), Positives = 262/618 (42%), Gaps = 75/618 (12%)

Query: 4   LIICEKPNVAKKIAEALGKPKKKSHNSVPYYELERNGESIVVASAVGHL--------YTL 55
           L +CEKP+ A+ IA+ LG  ++              G  + V   +GHL        Y  
Sbjct: 3   LYLCEKPSQARDIAKVLGANRRGDGCL--------QGAGVTVTWCIGHLLETAPPDAYDP 54

Query: 56  QEKTKTKFGDYPVYDINWVPASTLDEKKYIQKYIDALKKVSKDANKFYVATDWDIEGELI 115
           + K +    D P+    W     L + K   ++  A+K++  + ++  +ATD D EGE+I
Sbjct: 55  RYK-RWVLADLPIVPERW---KMLVKPKTASQF-KAVKRLLGECSELVIATDADREGEMI 109

Query: 116 GYHALNFSCGQKNAHRLRFSSLTKKEILKAYE--NPNEIDFGLVDAGDSRHKIDWYFGIN 173
               +     +    RL  S+L    I KA     P    F L  A   R + DW  G+N
Sbjct: 110 ARELVEHCRYRGPIRRLWLSALDDASIRKALAALKPGAETFNLYHAALGRSRADWLIGMN 169

Query: 174 VSRALMQAVSSVKRWKTLSTGRVQGPALAFLVDKELEIRNFVPTPYWVLEALLDNDLIA- 232
           +SR              L  GRVQ P L  +VD++  I +F+P P+W ++  L  D  A 
Sbjct: 170 MSRLFTLLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIADFIPVPFWAIDVQLLADGTAF 229

Query: 233 ----------VHELEKFWDEEQANKAYEKVKGQKQATVSDVKKSMKTIPPNPPFDLGALQ 282
                       +  +  D+ +A +A E ++    A +  +K   +      PFDLG LQ
Sbjct: 230 TAQWQAPDDYCDDQGRCLDQARAQQAAEAMRNAACARLLKLKTERQREAAPLPFDLGTLQ 289

Query: 283 REAHNMFRFSPKKTQEVAQKLYE-KGYCSYPRTSSQKLP-DDKAYMDEVLKNLSKNKNYK 340
                      ++T ++AQ LYE     +YPR+    LP         ++  L+++    
Sbjct: 290 EVCSKKLGLGAQETLDIAQALYETHKLITYPRSDCGYLPLSQHGEARAIVAALAQSDPTL 349

Query: 341 PYIETILNENRKPISGKNDDPAHPAVHAVDVPK------EKLPDDELKLYELIARRTIAL 394
             +E  L+ +R+  S   +D    A H + +P       E+L      +YELI  R +A 
Sbjct: 350 AALEPHLDLSRR--SRAWNDAKVGAHHGI-IPTAAVRGLERLSGRPRAVYELIRARYLAQ 406

Query: 395 YWDNAKREYSKINLDINGETFKLSGSRTVEEGWHEIYYYTKFD---------EVELPELK 445
           +  N + + ++ + D  G+  +  G R VE GW                      LP L+
Sbjct: 407 FLPNHEYDRTQADFDCAGQALRAVGKRIVEPGWKRAMPEALAPARGNREAPAPQSLPTLQ 466

Query: 446 KNDVINVNNINFEAKETKPPKRYTMASIIKELE-----------KRKL------GTKATR 488
           +     V  IN + ++T PPK +T   +IK ++           K+KL      GT+ATR
Sbjct: 467 QGQDYAVGEINLKDQQTHPPKPFTEGDLIKAMKNVAKLVDDPRLKQKLKDTTGIGTEATR 526

Query: 489 ADILEKLTKRGYVIEDG-SLTVTDLGIGVTETLRKYCPEIVEETLTRDLEDKLELIQDKK 547
           A I++ L  RGY++  G +L  T     + + + +    I +   T   E  L+++Q  +
Sbjct: 527 AGIIQGLLDRGYLLRQGKALAATPAAFSLIDAVPR---PIADPGTTAIWEQALDMVQSGE 583

Query: 548 IKKEEVIQETKDKLTKIL 565
           +  EE + +    ++K++
Sbjct: 584 MPLEEFVAKQSAWMSKLV 601