Pairwise Alignments

Query, 823 a.a., DNA topoisomerase I from Methanococcus maripaludis S2

Subject, 883 a.a., DNA topoisomerase I from Synechococcus elongatus PCC 7942

 Score =  179 bits (455), Expect = 5e-49
 Identities = 163/592 (27%), Positives = 259/592 (43%), Gaps = 70/592 (11%)

Query: 1   MTGLIICEKPNVAKKIAEALGKPKKKSHNSVPYYELERNGESIVVASAVGHLYTLQEKTK 60
           M  L+I E P  A+ I   L K  +   +     +L ++   I           L    +
Sbjct: 1   MPKLVIVESPTKARTIRNYLPKDYRVEASMGHVRDLPQSASDIPTELKGEKWSNLGVDVE 60

Query: 61  TKFGDYPVYDINWVPASTLDEKKYIQKYIDALKKVSKDANKFYVATDWDIEGELIGYHAL 120
             F   P+Y +        D+KK ++   DALK    DA++  +ATD D EGE I +H L
Sbjct: 61  NNFA--PLYIV------PKDKKKIVKTLKDALK----DADELILATDEDREGESISWHLL 108

Query: 121 NFSCGQKNAHRLRFSSLTKKEILKAYENPNEIDFGLVDAGDSRHKIDWYFGINVSRALMQ 180
                +    R+ F  +T++ I  A +N  ++D  LV A ++R  +D   G  +S  L +
Sbjct: 109 QLLQPRVPTKRMVFHEITQEAIQAALKNCRDVDQRLVHAQETRRILDRLVGYTLSPLLWK 168

Query: 181 AVSSVKRWKTLSTGRVQGPALAFLVDKELEIRNFVPTPYWVLEALLDNDLIAVHELE-KF 239
            ++    W  LS GRVQ  A+  LV +E   R F    YW L+A L    +   + E K 
Sbjct: 169 KIA----WG-LSAGRVQSVAVRLLVQRERARRAFRQGSYWDLKAQLT---VEAGQFEAKL 220

Query: 240 W-----------------------------DEEQANKAYEKVKGQKQATVSDVKKSMKTI 270
           W                             D+++A    ++++ Q    V  +++   T 
Sbjct: 221 WTLAGQRLATGNDFDESTGQIIAGRQVCLLDQQEAEALRDRLQTQPWQ-VKSLEEKPTTR 279

Query: 271 PPNPPFDLGALQREAHNMFRFSPKKTQEVAQKLYEKGYCSYPRTSSQKLPDDKAYMDEVL 330
            P PPF    LQ+E++   R S ++T  VAQ LYE+G+ +Y RT S  L        E  
Sbjct: 280 KPAPPFTTSTLQQESNRKLRLSARETMRVAQSLYERGFITYMRTDSVHLSQQAI---EAA 336

Query: 331 KNLSKNKNYKPYIETILNENRKPISGKNDDPAH----PAVHAVDVPKEK-LPDDELKLYE 385
           ++  +    K Y+       +     KN   AH    PA +   +P+E  L   E  LY+
Sbjct: 337 RSCVEQMYGKNYLSP--QPRQFTTKSKNAQEAHEAIRPAGNTFRLPQETGLSGAEFALYD 394

Query: 386 LIARRTIALYWDNAKREYSKINLDINGETFKLSGSRTVEEGWHEIYYYTKFD-------- 437
           LI +RTIA     A++    + L+++   F+ SG R    G+   Y     D        
Sbjct: 395 LIWKRTIASQMAEARQTMLSVLLEVDNAEFRASGKRIDFPGFFRAYVEGSDDPDAALEDR 454

Query: 438 EVELPELKKNDVINVNNINFEAKETKPPKRYTMASIIKELEKRKLGTKATRADILEKLTK 497
           E+ LP LK  D      +     ET+PP RYT AS++K LE   +G  +T A I+  +  
Sbjct: 455 EILLPALKVGDRPTCQELAAIGHETQPPARYTEASLVKMLENEGIGRPSTYASIIGTIVD 514

Query: 498 RGYV-IEDGSLTVTDLGIGVTETLRKYCPEIVEETLTRDLEDKLELIQDKKI 548
           RGY  +   +LT T     VT  L ++ P++V+ + +  +E  L+ I + ++
Sbjct: 515 RGYAQLVSNTLTPTFTAFAVTALLEQHFPDLVDTSFSARMEQSLDDISNGEV 566