Pairwise Alignments

Query, 823 a.a., DNA topoisomerase I from Methanococcus maripaludis S2

Subject, 900 a.a., DNA topoisomerase I from Sinorhizobium meliloti 1021

 Score =  183 bits (464), Expect = 4e-50
 Identities = 187/680 (27%), Positives = 293/680 (43%), Gaps = 102/680 (15%)

Query: 4   LIICEKPNVAKKIAEALGKPKKKSHNSVPYYELERNGESIVVASAVGHLYTLQEKTKTKF 63
           +++ E P+ AK I + LG          P Y+         V ++ GH+  L  K  +  
Sbjct: 9   VVVVESPSKAKTINKYLG----------PGYK---------VLASFGHVRDLPAKDGSVR 49

Query: 64  GDYPVYDINWVPASTLDEKKYIQKYIDALKKVSKDANKFYVATDWDIEGELIGYHALNFS 123
            D   ++++W         K ++   DA+K     ++   +ATD D EGE I +H L+  
Sbjct: 50  PDED-FEMSWEVDGA--SAKRMKDIADAVKS----SDGLILATDPDREGEAISWHVLDLL 102

Query: 124 -----CGQKNAHRLRFSSLTKKEILKAYENPNEIDFGLVDAGDSRHKIDWYFGINVSRAL 178
                 G K   R+ F+++TKK +L A   P +ID  LVDA  +R  +D+  G N+S  L
Sbjct: 103 RKKKVIGDKPVKRVVFNAITKKAVLDAMAEPRDIDASLVDAYLARRALDYLVGFNLSPVL 162

Query: 179 MQAVSSVKRWKTLSTGRVQGPALAFLVDKELEIRNFVPTPYWVLEALLDNDLIAVHEL-- 236
            + +   +     S GRVQ  AL  + D+E EI  FV   YW + ALL        E   
Sbjct: 163 WRKLPGAR-----SAGRVQSVALRLVCDREAEIERFVTEEYWNISALLKTPRGDEFEARL 217

Query: 237 ----------EKFWDEEQANKAYEKVKGQKQATVSDVKKSMKTIPPNPPFDLGALQREAH 286
                     +   + E+AN+    + G      S   K +K   P+PPF    LQ+ A 
Sbjct: 218 VSADGKRLPPKAIGNGEEANRLKSLLDGASYVVESVEAKPVKR-NPSPPFTTSTLQQAAS 276

Query: 287 NMFRFSPKKTQEVAQKLYE--------KGYCSYPRTSSQKLPDDKAYMDEVLKNLSKNKN 338
           +   FS  +T +VAQKLYE         G  +Y RT   ++  +              + 
Sbjct: 277 SKLGFSASRTMQVAQKLYEGVDIGGETVGLITYMRTDGVQMAPEAIEAARQAIGSQFGER 336

Query: 339 YKPYIETILNENRKPISGKNDDPAHPAVHAVDVPKEK------LPDDELKLYELIARRTI 392
           Y P      +        KN   AH A+   D  +        L  D L+LY+L+ +R I
Sbjct: 337 YLPEKPRFYS-----TKAKNAQEAHEAIRPTDFDRTPDQVRRFLDGDMLRLYDLVWKRGI 391

Query: 393 ALYWDNA--KREYSKINLDINGET--FKLSGSRTVEEGWHEIYYYTKFD---------EV 439
           A    +A  +R  ++I  D  G+    + +GS    +G+   Y   K D         + 
Sbjct: 392 ASQMASAEIERTTAEIVADNAGKKAGLRATGSVIRFDGFIAAYTDMKEDGEQADDGDEDG 451

Query: 440 ELPELKKNDVINVNNINFEAKETKPPKRYTMASIIKELEKRKLGTKATRADILEKLTKRG 499
            LPE+   + +    IN     T+PP RY+ A++IK++E+  +G  +T A  +  L  R 
Sbjct: 452 RLPEINARENLAKQKINASQHFTEPPPRYSEATLIKKMEELGIGRPSTYAATVTTLIDRD 511

Query: 500 YV-IEDGSLTVTDLGIGVTETLRKYCPEIVEETLTRDLEDKLELIQDKKIKKEEVIQE-T 557
           YV I+   L     G  VT  L  +    VE   T  LE+KL+ I   ++  ++V+++  
Sbjct: 512 YVEIDKRKLVPQAKGRLVTAFLESFFTRYVEYDFTASLEEKLDQISAGELNWKDVLRDFW 571

Query: 558 KDKLTKILGEFRLKEKEIGTELVDKLDSTNRSLQ--IIGKCKCGGDMIIIRTKGKKR--- 612
           KD  ++I     L+       + + LD+ N  L   +  K + GGD  I +  G  +   
Sbjct: 572 KDFFSQIEDTKELR-------VTNVLDALNEELAPLVFPKREDGGDPRICQVCGTGKLSL 624

Query: 613 -------FVGCSNYPDCEVT 625
                  FVGCSNYP+C  T
Sbjct: 625 KLGKYGAFVGCSNYPECNYT 644



 Score = 66.6 bits (161), Expect = 6e-15
 Identities = 32/78 (41%), Positives = 45/78 (57%), Gaps = 10/78 (12%)

Query: 680 EEKICPKCGN-KLLIKKGPYGVFRGCENYPKCKYTEKLNGES---------NEKEIVGKC 729
           + +IC  CG  KL +K G YG F GC NYP+C YT +L+ +S         NE + +GK 
Sbjct: 610 DPRICQVCGTGKLSLKLGKYGAFVGCSNYPECNYTRQLSSDSNGDAEAAAANEPQSLGKD 669

Query: 730 PKCGSDLYKRKGRFGEFI 747
           P  G ++  R GRFG ++
Sbjct: 670 PHTGEEITLRNGRFGPYV 687



 Score = 43.1 bits (100), Expect = 7e-08
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 4/52 (7%)

Query: 729 CPKCGSDLYKRK-GRFGEFIGCSNYPKCRHTEKIDKKKEDTPGETKAETKKE 779
           C  CG+     K G++G F+GCSNYP+C +T ++     D+ G+ +A    E
Sbjct: 614 CQVCGTGKLSLKLGKYGAFVGCSNYPECNYTRQL---SSDSNGDAEAAAANE 662