Pairwise Alignments

Query, 823 a.a., DNA topoisomerase I from Methanococcus maripaludis S2

Subject, 694 a.a., DNA topoisomerase III (RefSeq) from Shewanella amazonensis SB2B

 Score =  155 bits (391), Expect = 1e-41
 Identities = 162/585 (27%), Positives = 256/585 (43%), Gaps = 82/585 (14%)

Query: 4   LIICEKPNVAKKIAEALGKPKKKSHNSVPYYELERNGESIVVASAVGHLYTLQEKT--KT 61
           L I EKP++ + IAE L KP KK      Y EL   G    V   +GHL    E      
Sbjct: 27  LYIAEKPSLGRAIAEVLPKPHKKGEG---YIEL---GNGDCVTWCIGHLLEQAEPDAYSP 80

Query: 62  KFGDYPVYDINWVPAS-TLDEKKYIQKYIDALKKVSKDANKFYVATDWDIEGELIG---- 116
           ++  + +  +  +PA   L  +   +  +  +K++ K A+    A D D EG+L+     
Sbjct: 81  EYKQWQLAHLPIIPAEWKLTPRSSAKSQLAVVKRLIKQASSLVHAGDPDREGQLLVDEVI 140

Query: 117 YHALNFSCGQKNAHRLRFSSLTKKEILKAYEN--PNEIDFGLVDAGDSRHKIDWYFGINV 174
            HA   +    +  RL  S L    + +A      N+    L  +  +R + DW +G+N+
Sbjct: 141 SHAKVSASKLASTQRLLISDLNPDAVRRALGQLRSNKEFVPLATSALARSRADWLYGLNM 200

Query: 175 SRALMQAVSSVKRWKTLSTGRVQGPALAFLVDKELEIRNFVPTPYWVLEALLDNDLIAVH 234
           +RA       V     LS GRVQ P L  +V ++L+I +F P  ++ + A +  D     
Sbjct: 201 TRAYTLQGRKVGYAGVLSVGRVQTPLLGLVVRRDLDIEHFEPKDHYEVLAHITTD----- 255

Query: 235 ELEKF---WDEEQANKAYEKVKGQ----------------KQATVSDVKKSMKTIPPNPP 275
           + E F   W   +A + Y   +G+                K A V  V    K   P   
Sbjct: 256 KGESFCAKWQPSEACQPYMDEEGRVLSRRLAETVVSRIGGKPALVEHVSHKDKKQAPPLL 315

Query: 276 FDLGALQREAHNMFRFSPKKTQEVAQKLYEK-GYCSYPRTSSQKLPDDK-AYMDEVLKNL 333
           + L ALQ +    F  S K+  + AQ LYE+    +YPR+ S+ LP ++ A + +VL  +
Sbjct: 316 YSLSALQIDCAKRFGMSAKEVLDTAQSLYERHKLITYPRSDSRHLPKEQLALVPDVLSAV 375

Query: 334 SKNKNYKPYIETILNENRKPISGKNDDPAHPAVHAVDVPKEK------LPDDELKLYELI 387
           S N      +E   + +   +S   DD    A HA+ VP  K      L   E +LY  I
Sbjct: 376 SANA--PELLEGAPSPDLHLVSKAWDDSKVDAHHAI-VPTGKRTALSQLNQRERQLYLHI 432

Query: 388 ARRTIALYWDNAKREYSKINLDINGETFKLSGSRTVEEGWHEIYY--YTKFDEVE----- 440
           AR+ +A ++ N     ++I L I G +F    S     GW  ++    T+ DE +     
Sbjct: 433 ARQYLAQFYPNRLLADTEIQLIIEGGSFIARASVERAPGWRVLFQGRSTEQDEAKEPQET 492

Query: 441 -------LPELKKNDVINVNNINFEAKETKPPKRYTMASIIKEL---------------- 477
                  LP L K D+    +    AK+T+PPK +T A+++  +                
Sbjct: 493 DASQKTPLPALNKGDIARCCHGELLAKQTQPPKHFTDATLLSAMTGIARYVSSPDIKRIL 552

Query: 478 -EKRKLGTKATRADILEKLTKRGYVIEDG-SLTVTDLGIGVTETL 520
            +   LGT+ATRA I+E L KRG+++  G S+  +  G G+  +L
Sbjct: 553 KDTDGLGTEATRAGIIELLFKRGFLVRQGKSIVASQAGRGLIASL 597