Pairwise Alignments

Query, 823 a.a., DNA topoisomerase I from Methanococcus maripaludis S2

Subject, 872 a.a., DNA topoisomerase I (RefSeq) from Shewanella amazonensis SB2B

 Score =  222 bits (565), Expect = 8e-62
 Identities = 205/735 (27%), Positives = 338/735 (45%), Gaps = 73/735 (9%)

Query: 86  QKYIDALKKVSKDANKFYVATDWDIEGELIGYHALNFSCGQKNAH-RLRFSSLTKKEILK 144
           +K +  L+ ++  A++ Y+ATD D EGE I +H      G ++ + R+ F+ +TK  I +
Sbjct: 98  EKVVKELQSLASSADQIYLATDLDREGEAIAWHLQEVIGGDESRYKRVVFNEITKGAIQE 157

Query: 145 AYENPNEIDFGLVDAGDSRHKIDWYFGINVSRALMQAVSSVKRWKTLSTGRVQGPALAFL 204
           A+  P +++  +V+A  +R  +D   G  VS  L + V+     + LS GRVQ  A+  +
Sbjct: 158 AFSRPTDLNTNMVNAQQARRFLDRVVGFMVSPLLWKKVA-----RGLSAGRVQSVAVRLV 212

Query: 205 VDKELEIRNFVPTPYWVLEALLDNDLIA--VHELEKFWDEE----QANKAYEKVKGQKQA 258
           V++E EI+ FVP  +W + A L     A  V E+ ++ +E       ++A   V   ++A
Sbjct: 213 VEREAEIKAFVPEEFWDVHATLSTPAAAELVMEVSRYRNEAFEPVTQSEAMAAVNALEKA 272

Query: 259 --TVSDVKKSMKTIPPNPPFDLGALQREAHNMFRFSPKKTQEVAQKLYEKGYCSYPRTSS 316
             TV+D +    +  P+ PF    LQ+ A     F  KKT  +AQ+LYE G+ +Y RT S
Sbjct: 273 AFTVTDREDKATSSKPSAPFITSTLQQAASTRLGFGVKKTMMLAQRLYEAGHITYMRTDS 332

Query: 317 QKLPDDKAYMDEVLKNLSKNKNYKPYIETILNENRKPISGKNDDPAHPAVHAVDVPKEK- 375
             L  +   ++ V  ++ K    K   E+ +    K    +    AH A+   +V  E  
Sbjct: 333 TNLSQEA--LENVRAHIEKEFGSKYLPESPIRYGSK----EGAQEAHEAIRPSNVKVESA 386

Query: 376 ----LPDDELKLYELIARRTIALYWDNAKREYSKINLDINGETFKLSGSRTVEEGWHEIY 431
               +  D  +LYELI R+ +A     A  + ++I         K SG     +GW  + 
Sbjct: 387 TLIDMERDAQRLYELIWRQFVACQMTPAVYDATRITAKAGDYELKASGRILKFDGWTRVQ 446

Query: 432 YYTKFDEVE---LPELKKNDVINVNNINFEAKETKPPKRYTMASIIKELEKRKLGTKATR 488
              K    E   LP+++  D++++  ++ +   TKPP RY+ AS++KELEKR +G  +T 
Sbjct: 447 PALKKKNEEDNTLPDVQVGDMLSLKALDPKQHFTKPPARYSEASLVKELEKRGIGRPSTY 506

Query: 489 ADILEKLTKRGYV-IEDGSLTVTDLGIGVTETLRKYCPEIVEETLTRDLEDKLELIQDKK 547
           A I+  +  RGYV +E+       +G  VTE L +   E++    T  +E  L+      
Sbjct: 507 AAIISTIQDRGYVKVENRRFYAEKMGEIVTERLVESFSELMNYDFTAGMEQTLD-----D 561

Query: 548 IKKEEVIQETKDKLTKILGEFRLKEKEIGTELVDKLDSTNRSLQIIGKCKCGGDMIIIRT 607
           + K +  ++ K  L      F  K ++   E        N+ +     C   G  + IRT
Sbjct: 562 VAKGD--KDWKGVLDGFYSGFTAKLEKAEAEPDAGGMRPNQMVLTDIPCPTCGRQMGIRT 619

Query: 608 KGKKRFVGCSNY-----PDCEVTFPL-PQKGRIKVLNEVCE--------KCQNPVIGLD- 652
                F+GCS Y       C+ T  L P +  I   +E  E        +C    + +D 
Sbjct: 620 GTTGVFLGCSGYALPPKERCKTTLNLTPGEEAISDSSEDAETDALRAMHRCGKCGMAMDS 679

Query: 653 -------RIKIC-VNPDCSTRISEEDKKEIEKAEKEEKICPKCGNKLLIKKGPYGVFRGC 704
                  ++ +C  NP+C     E+   +++  E     C +CG+ + +K G +G + GC
Sbjct: 680 YLLDETRKLHVCGNNPECDGYEVEKGAFKLKGYEGPIIECDRCGSDMELKNGRFGKYFGC 739

Query: 705 ENYPKCKYTEKL--NGES---NEKEI---VGKCPKCGSDLYKRKGRFGEFIGCSNYPKCR 756
            N   CK T KL  NGE+    E  I     KC K  +    R G  G F+  S +P+ R
Sbjct: 740 TN-ESCKNTRKLLKNGEAAPPKEDPIHLPELKCTKSDAYFVLRDGAAGIFLAASTFPRSR 798

Query: 757 HT-----EKIDKKKE 766
            T     E++ K +E
Sbjct: 799 ETRAPLVEELKKYRE 813