Pairwise Alignments

Query, 823 a.a., DNA topoisomerase I from Methanococcus maripaludis S2

Subject, 187 a.a., topoisomerase DNA-binding C4 zinc finger domain-containing protein (RefSeq) from Shewanella amazonensis SB2B

 Score = 95.1 bits (235), Expect = 3e-24
 Identities = 41/89 (46%), Positives = 60/89 (67%), Gaps = 3/89 (3%)

Query: 678 EKEEKICPKCGNKLLIKKGPYGVFRGCENYPKCKYTEKL-NGESNEKEIV--GKCPKCGS 734
           E+E ++CP+CG++L ++   +G F GC NYP C+YT  L   ES E +++    CP+CG 
Sbjct: 17  EREFELCPECGSELSVRHSKHGSFVGCNNYPNCQYTRPLVQHESIETQVIEGSVCPECGH 76

Query: 735 DLYKRKGRFGEFIGCSNYPKCRHTEKIDK 763
           +L  + GRFG FIGC+ YP+C H EK D+
Sbjct: 77  ELAVKSGRFGIFIGCTQYPECHHIEKPDQ 105



 Score = 81.3 bits (199), Expect = 4e-20
 Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 45/162 (27%)

Query: 597 KCGGDMIIIRTKGKKRFVGCSNYPDCEVTFPLPQKGRIKVLNEVCEKCQNPVIGLDRIKI 656
           +CG ++ +  +K    FVGC+NYP+C+ T PL Q                          
Sbjct: 25  ECGSELSVRHSKHGS-FVGCNNYPNCQYTRPLVQH------------------------- 58

Query: 657 CVNPDCSTRISEEDKKEIEKAEKEEKICPKCGNKLLIKKGPYGVFRGCENYPKCKYTEKL 716
                          + IE    E  +CP+CG++L +K G +G+F GC  YP+C + EK 
Sbjct: 59  ---------------ESIETQVIEGSVCPECGHELAVKSGRFGIFIGCTQYPECHHIEKP 103

Query: 717 NGESNEKEIVGKCPKCGSDLY-KRKGRFGE-FIGCSNYPKCR 756
           +  + E+ +   CP C + +   R  R+G+ F  CS YPKC+
Sbjct: 104 DQAAPEEAVA--CPVCQTGVMDHRTNRYGKGFYACSCYPKCK 143