Pairwise Alignments

Query, 823 a.a., DNA topoisomerase I from Methanococcus maripaludis S2

Subject, 915 a.a., DNA topoisomerase (NCBI) from Rhodospirillum rubrum S1H

 Score =  197 bits (500), Expect = 3e-54
 Identities = 206/824 (25%), Positives = 343/824 (41%), Gaps = 154/824 (18%)

Query: 4   LIICEKPNVAKKIAEALGKPKKKSHNSVPYYELERNGESIVVASAVGHLYTLQEKTKTKF 63
           +++ E P  AK I + LGK                     VV ++ GH+  L  K  +  
Sbjct: 3   VVVVESPAKAKTINKYLGK-------------------DYVVLASYGHIRDLPPKDGSVR 43

Query: 64  GDYPVYDINWVPASTLDEKKYIQKYIDALKKVSKDANKFYVATDWDIEGELIGYHALNF- 122
            D   + ++W     +D K   +K++  + +  K A+   +ATD D EGE I +H  +  
Sbjct: 44  PDEG-FAMDW----EIDAKS--EKHVKDITQALKSADGLLLATDPDREGEAISWHVRDVL 96

Query: 123 ----SCGQKNAHRLRFSSLTKKEILKAYENPNEIDFGLVDAGDSRHKIDWYFGINVSRAL 178
               +   K   R+ F+++T+  + +A  NP ++D  LV+A  +R  +D+  G  +S  L
Sbjct: 97  EKRKALVGKQVQRITFNAITRSAVEEALRNPRDLDTPLVEAYLARRALDYLVGFTLSPVL 156

Query: 179 MQAVSSVKRWKTLSTGRVQGPALAFLVDKELEIRNFVPTPYWVLEALLDNDLIAV----- 233
            + +   +     S GRVQ  AL  + ++E E+  FV   YW ++A+L +    +     
Sbjct: 157 WRKLPGSR-----SAGRVQSVALRLICEREQEVERFVSREYWTVDAILASPQGQIFRARL 211

Query: 234 -----HELEKFW--DEEQANKAYEKVKGQKQATVSDVKKSMKTIPPNPPFDLGALQREAH 286
                 +L+KF   DE  A  A E++K      V  V++      P  PF    +Q+EA 
Sbjct: 212 SQLDGQKLDKFGLPDETTALAALERIKAAT-LRVESVERKQARRNPAAPFTTSTIQQEAS 270

Query: 287 NMFRFSPKKTQEVAQKLYEK--------GYCSYPRTSSQKLPDDKAYMDEVLKNLSKNKN 338
               FS ++T +VAQKLYE         G  +Y RT    +  +  +    L        
Sbjct: 271 RKLYFSARQTMQVAQKLYEGVDLGGETVGLITYMRTDGVSIAPEAVFATRDLIGAEFGAA 330

Query: 339 YKPYIETILNENRKPISGKNDDPAHPAVHAVDVPKEK------LPDDELKLYELIARRTI 392
           Y P    +          KN   AH A+   DV +        L  ++ KLYEL+ +RT+
Sbjct: 331 YLPEQPRVYKTK-----AKNAQEAHEAIRPTDVARTPQSVAPYLTAEQRKLYELVWKRTV 385

Query: 393 ALYWDNAKREYSKINLDINGETFKL----SGSRTVEEGWHEIYYYTKFDEVE-------- 440
           A    +A  +  ++ +DI     K+    +GS    +G+ ++Y     D  E        
Sbjct: 386 ASQMASAILD--QVAVDIADPEAKVVLHATGSVIQFDGFLKVYREDFDDRPESSPDGAGE 443

Query: 441 -----LPELKKNDVINVNNINFEAKETKPPKRYTMASIIKELEKRKLGTKATRADILEKL 495
                LP L++ D +   ++  +   T+PP RYT AS++K +E+  +G  +T A IL  L
Sbjct: 444 DENRLLPPLREGDGVKREDVKADQHFTQPPPRYTEASLVKRMEELGIGRPSTYASILSVL 503

Query: 496 TKRGYVIEDGSLTV-TDLGIGVTETLRKYCPEIVEETLTRDLEDKLELIQDKKIKKEEVI 554
             R YV  D    +  D G  VT  L  +    V+ + T DLE++L+ I D K+  + V+
Sbjct: 504 QDREYVRLDARRFIPEDRGRLVTAFLENFFSRYVQYSFTADLENQLDEISDGKLGWKTVL 563

Query: 555 QE-TKDKLTKILGEFRLK--------EKEIGTELVDKLDSTNRSLQIIGKCKCGGDMIII 605
           +    D    I G   L+        +KE+G  L  + +      ++   C  G   + +
Sbjct: 564 ERFWMDFKAAIEGTATLRVSEVLDALDKELGPHLFPQAED-GHDPRVCPVCSAG--RLGL 620

Query: 606 RTKGKKRFVGCSNYPDCEVTFPLPQKGRIKVLNEVCEKCQNPVIGLDRIKICVNPDCSTR 665
           R      FVGCSNYPDC+ T PL  K                                  
Sbjct: 621 RIGKFGAFVGCSNYPDCKFTRPLVTKEG-------------------------EGGDGAA 655

Query: 666 ISEEDKKEIEKAEKEEKICPKCGNKLLIKKGPYGVF------------RGCENYPKCKYT 713
           ++E+  K + K        P  G  + ++KGPYG++            +     P+    
Sbjct: 656 LAEDGTKPLGKD-------PVSGEDVTLRKGPYGLYVQKGEAAPVEKGKKAVKPPRVSIP 708

Query: 714 EKLNGESNEKEI----------VGKCPKCGSDLYKRKGRFGEFI 747
           + ++  + + +I          VG  P+ G+ +    GRFG +I
Sbjct: 709 KDMDAATIDLDIALKLLSLPRPVGDHPETGTMISAGIGRFGPYI 752



 Score = 43.5 bits (101), Expect = 5e-08
 Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 729 CPKCGSD-LYKRKGRFGEFIGCSNYPKCRHTEKIDKKKEDTPGETKAETKKEAKP 782
           CP C +  L  R G+FG F+GCSNYP C+ T  +   KE   G+  A  +   KP
Sbjct: 610 CPVCSAGRLGLRIGKFGAFVGCSNYPDCKFTRPL-VTKEGEGGDGAALAEDGTKP 663