Pairwise Alignments

Query, 823 a.a., DNA topoisomerase I from Methanococcus maripaludis S2

Subject, 186 a.a., hypothetical protein from Rahnella sp. WP5

 Score = 95.9 bits (237), Expect = 2e-24
 Identities = 45/98 (45%), Positives = 62/98 (63%), Gaps = 4/98 (4%)

Query: 677 AEKEEKICPKCGNKLLIKKGPYGVFRGCENYPKCKYTEKLNGESNE---KEIVGK-CPKC 732
           A+K+   CP CG  L+I+ G +G F  C +YP+C+Y   L  +++    K + G+ CPKC
Sbjct: 8   ADKQNGSCPACGADLVIRSGRHGPFLSCSSYPQCQYVRPLKSQADGHIVKILEGQACPKC 67

Query: 733 GSDLYKRKGRFGEFIGCSNYPKCRHTEKIDKKKEDTPG 770
            S L  R+GR+G FIGCS YP+C H E IDK +E T G
Sbjct: 68  DSTLVLRQGRYGMFIGCSQYPECDHIEAIDKPEETTLG 105



 Score = 68.9 bits (167), Expect = 2e-16
 Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 13/153 (8%)

Query: 594 GKCKCGGDMIIIRTKGKKRFVGCSNYPDCEVTFPLPQKGR---IKVL-NEVCEKCQNPVI 649
           G C   G  ++IR+     F+ CS+YP C+   PL  +     +K+L  + C KC + ++
Sbjct: 13  GSCPACGADLVIRSGRHGPFLSCSSYPQCQYVRPLKSQADGHIVKILEGQACPKCDSTLV 72

Query: 650 GLDRIKICVNPDCSTRISEEDKKEIEKAEKEEKICPKCG-NKLLIKKGPYG-VFRGCENY 707
            L + +  +   CS     +  + I+K E+    CP+CG   LL +K  +G VF  C+ Y
Sbjct: 73  -LRQGRYGMFIGCSQYPECDHIEAIDKPEETTLGCPQCGKGHLLQRKSRFGKVFHACDRY 131

Query: 708 PKCKYTEKLNGESNEKEIVGKCPKCGSDLYKRK 740
           P+C++        N K + G+C  C   L   K
Sbjct: 132 PECQFA------INNKPVAGECVHCHYPLLMEK 158