Pairwise Alignments

Query, 823 a.a., DNA topoisomerase I from Methanococcus maripaludis S2

Subject, 695 a.a., type IA DNA topoisomerase from Parabacteroides merdae CL09T00C40

 Score =  194 bits (493), Expect = 1e-53
 Identities = 184/638 (28%), Positives = 296/638 (46%), Gaps = 76/638 (11%)

Query: 5   IICEKPNVAKKIAEALGKPKKKSHNSVPYYELERNGESIVVASAVGHLYTLQEKTKTKFG 64
           II EKP+VA++IA  +G  K++      Y+E    G    V  A GHL  +Q      +G
Sbjct: 4   IIAEKPSVAREIARIVGATKREEG----YFE----GGGYAVTWAFGHL--VQLAMPDGYG 53

Query: 65  -------DYPVYDINW--VPASTLDEKKY-----IQKYIDALKKVSKDANKFYVATDWDI 110
                  + P+    +  VP     EK Y     +   I  +K++   +    VATD   
Sbjct: 54  VRGFVRDNLPIIPDTFTLVPRQVRTEKGYKPDSGVVSQIKVIKRLFDTSEHIIVATDAGR 113

Query: 111 EGELIGYHALNFSCGQKNAHRLRFSSLTKKEI---LKAYENPNEIDFGLVDAGDSRHKID 167
           EGELI  +  +++       RL  SSLT K I   L+  E+ ++ D  L  A  +R + D
Sbjct: 114 EGELIFRYLYHYTGCTTPFVRLWISSLTDKAIREGLRKLEDGSKYD-NLYLAAKARSESD 172

Query: 168 WYFGINVSRALMQAVSSVKRWKTLSTGRVQGPALAFLVDKELEIRNFVPTPYWVLEALLD 227
           W  GIN ++AL  A        T S GRVQ P LA + ++  E R F    +W L    D
Sbjct: 173 WLVGINGTQALSIAAGH----GTYSVGRVQTPTLAMVCERYWENRRFTSEAFWQLHIATD 228

Query: 228 N---DLIAVHELEKFWDEEQANKAYEKVKGQKQATVSDVKKSMKTIPPNPPFDLGALQRE 284
               +++     EK+ ++E A + Y KVK    ATV+  ++  KT      +DL  LQ+E
Sbjct: 229 GCDGEVVKFSSSEKWKEKEPAMELYNKVKAAGCATVTKAERKEKTEETPLLYDLTTLQKE 288

Query: 285 AHNMFRFSPKKTQEVAQKLYEKGYCSYPRTSSQKLPDDK-AYMDEVLKNLSKNKNYKPYI 343
           A+    F+ ++T E+AQKLYEK   +YPRT S+ +P+D  A + ++L  +     +K  +
Sbjct: 289 ANAKHGFTAEQTLEIAQKLYEKKLITYPRTGSRYIPEDVFAEIPKLLAFIGTQPEWKDKV 348

Query: 344 ETILNENRKPISGKNDDPAHPAVHAVDVPKEK---LPDDELKLYELIARRTIALYWDNAK 400
                  R+ +    DD      HA+ V  EK   L  ++  +Y++IA R +  + +   
Sbjct: 349 RAKAAPTRRSV----DDGKVTDHHALLVTGEKPLFLSKEDNTIYQMIAGRMVEAFSEKCV 404

Query: 401 REYSKINLDINGETFKLSGSRTVEEGWHEIYYYTKFDEVELPELKKNDVINVNNINFEAK 460
           ++ + +  +  G  F + GS   + GW  +Y   K +E+ +P  ++ D +     +    
Sbjct: 405 KDVTTVTAECAGVEFTVKGSVVKQTGWRAVYGEEK-EEITIPGWQEGDTLTPKGSSITEG 463

Query: 461 ETKPPKRYTMASII-------KELEKRKL---------GTKATRADILEKLTKRGYVIE- 503
           +TKP   +T A+++       KE+E   L         GT ATRA I+E L KRGY+   
Sbjct: 464 KTKPKPLHTEATLLSAMETAGKEIEDDALRQAMKDCGIGTPATRASIIETLFKRGYMERC 523

Query: 504 DGSLTVTDLGIGVTETLRKYCPEIVEETLTRDLEDKLELIQDKKIKKEEVIQETKDKLTK 563
             SL  T+ G+ +   ++     I +  +T + E +L      +I++ E+  +T  K   
Sbjct: 524 KKSLVPTEKGLALNSVVKTM--RIADVAMTGEWEKEL-----ARIERGELSDDTFRK--- 573

Query: 564 ILGEFRLKEKEIGTELV--DKLDSTNRSLQIIGKCKCG 599
              E     +EI +EL+  DKL  +  S     KC  G
Sbjct: 574 ---EIEAYTREITSELISCDKLFGSRDSGCACPKCGTG 608