Pairwise Alignments

Query, 823 a.a., DNA topoisomerase I from Methanococcus maripaludis S2

Subject, 670 a.a., DNA topoisomerase III (RefSeq) from Shewanella loihica PV-4

 Score =  146 bits (369), Expect = 3e-39
 Identities = 158/610 (25%), Positives = 262/610 (42%), Gaps = 82/610 (13%)

Query: 4   LIICEKPNVAKKIAEALGKPKKKSHNSVPYYELERNGESIVVASAVGHLYTLQEKTKT-- 61
           L I EKP++ + IA+ L KP KK       Y    NG++  V+  +GHL    E      
Sbjct: 3   LYIAEKPSLGRAIADVLPKPHKKGEG----YITAANGDT--VSWCIGHLLEQAEPDSYDP 56

Query: 62  -----KFGDYPVYDINWVPASTLDEKKYIQKYIDALKKVSKDANKFYVATDWDIEGELIG 116
                 F   P+    W     +  K   +  +  L+K+ K A++   A D D EG+L+ 
Sbjct: 57  AFKSWSFDHLPIVPQQW----KMTPKSKTRGQLSVLRKLVKQASQLVNAGDPDREGQLLV 112

Query: 117 YHALNFSC--GQK--NAHRLRFSSLTKKEILKAYEN--PNEIDFGLVDAGDSRHKIDWYF 170
              + +    G K     RL  S L  + + +A      N     L  +  +R + DW +
Sbjct: 113 DEVIAYLGVKGDKLEQTQRLLVSDLNPQAVKRALGQLRSNREFIPLSTSALARSRADWLY 172

Query: 171 GINVSRALMQAVSSVKRWKTLSTGRVQGPALAFLVDKELEIRNFVPTPYWVLEALLDNDL 230
           G+N++RA       V     LS GRVQ P L  +V ++  I +FV  P++ + A L    
Sbjct: 173 GMNMTRAYTLQGRKVGYQGVLSVGRVQTPLLGLVVRRDEAIEHFVSKPFYEVLANLYTQE 232

Query: 231 IAVHELEKFWDEEQANKAYEKVKG----------------QKQATVSDVKKSMKTIPPNP 274
            A    +  W   +A + Y   +G                ++ A V+D++   K      
Sbjct: 233 QA--HFKAKWQPSEACQPYMDEEGRVLSRRLAENVVGRITEQPAKVTDLQAKDKQQGQPL 290

Query: 275 PFDLGALQREAHNMFRFSPKKTQEVAQKLYEK-GYCSYPRTSSQKLPDDK-AYMDEVLKN 332
           P++L +LQ +A   F  S K   +  Q LYEK    +YPR+ S+ LP ++ A    V+  
Sbjct: 291 PYNLSSLQIDAAKRFGMSAKTVLDTCQSLYEKHKLITYPRSDSRYLPKEQLALAPSVIGA 350

Query: 333 LSKNKNYKPYIETILNENRKPISGKNDDPAHPAVHAVDVPKEK------LPDDELKLYEL 386
           + K              + K +S   +D    A HA+ VP EK      L   E ++Y  
Sbjct: 351 VLKGAG--ELTAQCAAPDLKIVSKAWNDAKVDAHHAI-VPTEKVANLSALTQAEKQIYLQ 407

Query: 387 IARRTIALYWDNAKREYSKINLDINGETFKLSGSRTVEEGWHEIYYYTKFDE-------- 438
           +AR+ +A ++   +   +++ ++I G  F     + +  GW +++     D+        
Sbjct: 408 LARQYLAQFYPVYRYHETQVEVEIAGGHFHTKAKQEIALGWKQLFPKRSDDKTDGEGDEA 467

Query: 439 -VELPELKKNDVINVNNINFEAKETKPPKRYTMASIIKEL----------EKRK------ 481
             +LP L K  +++        K+T+PPK +T A+++  +          E RK      
Sbjct: 468 LAQLPPLHKGQMLHSGQGELIEKQTQPPKAFTDATLLSAMTGISRYVTNPEIRKILKETD 527

Query: 482 -LGTKATRADILEKLTKRGYVIEDG-SLTVTDLGIGVTETLRKYCPEIVEETLTRDLEDK 539
            LGT+ATRA I+E L KRG++   G S+  T +G G+  +L +         +T   E  
Sbjct: 528 GLGTEATRAGIIELLFKRGFLARQGKSIVSTPVGRGLINSLPE---SATTPDMTALWESH 584

Query: 540 LELIQDKKIK 549
           L+ I  K+ K
Sbjct: 585 LDAISRKEAK 594