Pairwise Alignments

Query, 823 a.a., DNA topoisomerase I from Methanococcus maripaludis S2

Subject, 898 a.a., DNA topoisomerase I (RefSeq) from Shewanella loihica PV-4

 Score =  225 bits (573), Expect = 1e-62
 Identities = 226/803 (28%), Positives = 356/803 (44%), Gaps = 93/803 (11%)

Query: 86  QKYIDALKKVSKDANKFYVATDWDIEGELIGYHALNFSCGQKNAH-RLRFSSLTKKEILK 144
           +K +  L+ ++++A+  ++ATD D EGE I +H      G    + R+ F+ +TK  I +
Sbjct: 114 EKVVKELQSLAENADHIFLATDLDREGEAIAWHLQEVIGGDPERYQRVVFNEITKSAIQE 173

Query: 145 AYENPNEIDFGLVDAGDSRHKIDWYFGINVSRALMQAVSSVKRWKTLSTGRVQGPALAFL 204
           A+ +P++++  +V+A  +R  +D   G  VS  L + V+     + LS GRVQ  A   +
Sbjct: 174 AFSHPSQLNTNMVNAQQARRFLDRVVGFMVSPLLWKKVA-----RGLSAGRVQSVATRLV 228

Query: 205 VDKELEIRNFVPTPYWVLEA---LLDNDLIAVHELEKFW-------DEEQANKAYEKVKG 254
           V++E EI+ FVP  +W + A    L N+ + + ++ KF        +E QA  A   +K 
Sbjct: 229 VEREGEIKAFVPEEFWDIHAELTTLGNEGLKM-QVAKFKGDNFNPVNEAQAMVAVNALKD 287

Query: 255 QKQATVSDVKKSMKTIPPNPPFDLGALQREAHNMFRFSPKKTQEVAQKLYEKGYCSYPRT 314
            K    S   K+  +  P+ PF    LQ+ A     F  KKT  +AQ+LYE G+ +Y RT
Sbjct: 288 SKYQVSSREVKATSS-KPSAPFITSTLQQAASTRLGFGVKKTMMMAQRLYEAGHITYMRT 346

Query: 315 SSQKLPDDKAYMDEVLKNLSKNKNYKPYIETILNENRKPISGKNDDPAHPAVHA--VDVP 372
            S  L  +   +D V   + K    K   +  +    K    +    AH A+    V+V 
Sbjct: 347 DSTNLSQEA--LDSVRDMIGKEYGDKYLPDAPIRYGSK----EGAQEAHEAIRPSDVNVS 400

Query: 373 KEKLPD---DELKLYELIARRTIALYWDNAKREYSKINLDINGETFKLSGSRTVEEGWHE 429
              L D   D  +LYELI R+ +A     AK + +++ +       K SG     +GW  
Sbjct: 401 ATSLSDMERDAQRLYELIWRQFVACQMTPAKYDATRLTVTAGDYELKASGRTLKFDGWTR 460

Query: 430 IYYYTKFDEVE---LPELKKNDVINVNNINFEAKETKPPKRYTMASIIKELEKRKLGTKA 486
           +    K    E   LP + + DV+ +  +  +   TKPP RY+ AS++KELEKR +G  +
Sbjct: 461 VQTALKKKNEEDNTLPMVAEGDVLALEELLPKQHFTKPPARYSEASLVKELEKRGIGRPS 520

Query: 487 TRADILEKLTKRGYV-IEDGSLTVTDLGIGVTETLRKYCPEIVEETLTRDLEDKLELIQD 545
           T A I+  +  RGYV +E+       +G  V+E+L     E++    T  +E  L+ +  
Sbjct: 521 TYATIISTIQDRGYVKVENRRFYAEKMGEIVSESLIGSFEELMSYDFTAGMEQTLDNVAQ 580

Query: 546 KKIKKEEVIQETKDKLTKILGEFRLKEKEIGTELVDKLDSTNRSLQIIGKCKCGGDMIII 605
            +++ ++V+      LT  L +  L  +E G          N  +     C   G  + I
Sbjct: 581 GQLEWKKVLDNFYKGLTAQLEKAELPPEEGGMR-------PNEMVLTDIACPTCGRPMGI 633

Query: 606 RTKGKKRFVGCSNY-----PDCEVTFPL---------------PQKGRIKVLNEVCEKCQ 645
           RT     F+GCS Y       C+ T  L                   R K   +VC    
Sbjct: 634 RTGTTGVFLGCSGYALPPKERCKTTMNLTPGEEAVSENSEDAETDALRAKHRCDVCGTAM 693

Query: 646 NPVIGLDRIKICV---NPDCSTRISEEDKKEIEKAEKEEKICPKCGNKLLIKKGPYGVFR 702
           +  +  ++ K+ V   NP C     E+ + +I+  E     C +CGN + +K G +G + 
Sbjct: 694 DSYLIDEKRKLHVCGNNPICGGYEVEQGQFKIKGYEGPIIECDRCGNDMELKNGRFGKYF 753

Query: 703 GCENYPKCKYTEKL--NGE---SNEKEI---VGKCPKCGSDLYKRKGRFGEFIGCSNYPK 754
           GC N  +CK T KL  NGE     E  I     KC K       R G  G F+  S +PK
Sbjct: 754 GCTN-SECKNTRKLLKNGEVAPPKEDPIHLPELKCTKSDGYFVLRDGAAGIFLAASTFPK 812

Query: 755 CRHT-----EKIDKKKE----------DTPGETKAETKKEAKPKTTKKAAPKKTAT---- 795
            R T     E++ K +E          D P     E   +A  + ++K   +  AT    
Sbjct: 813 SRETRAPLVEELVKYRELLWPKYQYLADAP--VADEDGNKAVVRFSRKTKEQYVATEIDG 870

Query: 796 KTTKTTAKKTATKKTTTKKATAK 818
           K T  TAK    K  +  KA  K
Sbjct: 871 KATGWTAKFVGGKWVSEAKAKPK 893