Pairwise Alignments

Query, 823 a.a., DNA topoisomerase I from Methanococcus maripaludis S2

Subject, 818 a.a., topoisomerase IA from Dechlorosoma suillum PS

 Score =  212 bits (539), Expect = 8e-59
 Identities = 232/850 (27%), Positives = 375/850 (44%), Gaps = 128/850 (15%)

Query: 4   LIICEKPNVAKKIAEALGKPKKKSHNSVPYYELERNGESIVVASAVGHLYTLQEKTKTKF 63
           LII EKP+VA+ IA ALG   K+      ++E +      +V SA+GHL  L        
Sbjct: 5   LIIPEKPSVAQDIAAALGGFSKRED----WFERD----DAIVCSALGHLVELA----CPE 52

Query: 64  GDYPVYDINWVPAS----TLDEKKYIQKYIDALKKVS--KDANKFYVATDWDIEGELIGY 117
            + P +D+  +PA      L         +  LKK+   +D      A D   EGELI +
Sbjct: 53  AEDPGFDLARLPAIPSRFNLAPIAKTSARLSLLKKLMNRQDVQLVVNACDAGREGELI-F 111

Query: 118 HALNFSCG-QKNAHRLRFSSLTKKEILKAYENPN---EIDFGLVDAGDSRHKIDWYFGIN 173
             +   CG +K   R+   S+T   I +A+       E+D GL ++  SR + DW  GIN
Sbjct: 112 RYIYLCCGCRKPMQRMWIQSMTPAAIKEAFAKRRPGAELD-GLFNSAQSRSEGDWLVGIN 170

Query: 174 VSRALMQAVSSVKRWKTLST-GRVQGPALAFLVDKELEIRNFVPTPY------------- 219
            +RA     + V   +TLST GRVQ P LA +V +E  IR+F+  PY             
Sbjct: 171 GTRAYSILETRVTGERTLSTVGRVQTPTLALIVAREEAIRSFIAKPYYEIQGEFAAKTGV 230

Query: 220 ----WVLEALLDNDLIAVHELEKFWDEEQANKAYEKVKGQKQATVSDVKKSMKTIPPNPP 275
               W+  A   +        E+ +D+ +A+    K  G++ ++V+D      + PP   
Sbjct: 231 YGAKWIDTAFQADPSTPDARAERLFDKAKADAIVAKCTGKRPSSVADATTDSISTPPKL- 289

Query: 276 FDLGALQREAHNMFRFSPKKTQEVAQKLYEKG-YCSYPRTSSQKLPDDKAYMDEVLKNLS 334
           FDL  LQREA+  F FS  +T  +AQ LYEK    +YPRT S  LP+D  Y+D     L+
Sbjct: 290 FDLTTLQREANKKFGFSASQTLAIAQALYEKQKVLTYPRTDSSALPED--YLDTARATLT 347

Query: 335 K----NKNYKPY----IETILNENRKPISGKNDDPAHPAVHAVDVPKEKLPDDELKLYEL 386
           +         P+    +  +  + R   + K  D  H A+    +    L  +E K+++L
Sbjct: 348 RLGDGGLTVSPFAAKAVAMVKPDKRIFNNAKISD--HFAIIPTGLVSATLSGEEAKIFDL 405

Query: 387 IARRTIALYWDNAKREYSKINLDINGETFKLSGSRTVEEGWHEIYYYTKFDEVELPEL-- 444
           ++RR IA ++  AK   +     +  ETF+ SG   VEEGW  +Y   + D+ E P L  
Sbjct: 406 VSRRFIAAFFPPAKYLQTVRLTVVEQETFRASGRVLVEEGWLAVYG-KEADDSEDPALCA 464

Query: 445 -KKNDVINVNNINFEAKETKPPKRYTMASIIKELEK----------------RKLGTKAT 487
             K+++     I   + +TKPP R+T A+++  +E                 R LGT AT
Sbjct: 465 VAKDELPENRRIEAVSLKTKPPLRFTEATLLGAMESAGADIEDDELREAMKDRGLGTPAT 524

Query: 488 RADILEKLTK---------RGYVI-EDGSLTVTDLGIGVTETLRKYCPEIVEETLTRDL- 536
           RA  +E L           + YV+ E  +L  T+    + + LR+     +    T  L 
Sbjct: 525 RASTIEALLADKDGKGRSIQPYVVREKKNLAPTNKAFKLVKFLRENGLTALASAETTGLW 584

Query: 537 EDKLELIQDKKIKKEEVIQETKDKLTKILGEFRLKEKEIGTELVDKLDSTNRSLQIIGKC 596
           E KL  ++  + ++ + + E    +  +  EF  + + +  +L     +  ++  +   C
Sbjct: 585 EFKLREMEKGRCQRSDFMGE----IAALAREFVTRVQALAKDL--PASAAMQAKPMAAAC 638

Query: 597 -KCGGDMIIIRTKGKKRFVGCSNYPDCEVTFPLPQKGRIKVLNE------VCEKCQNPVI 649
            KCG   +    K             C   F + ++   +VL++      + +     + 
Sbjct: 639 PKCGNTTMGATAKTFS----------CSCGFRIWREVAGRVLSDTEGEKLIAQGSLPTLA 688

Query: 650 GLDRIK-------ICVNPDCSTRISEEDKKEIEKAEKEEKICPKCGNKLLIKKGPYGVFR 702
           G    K       + +  D S ++    ++  E +E     CP+CG  +  +KG  G F 
Sbjct: 689 GFTSSKKKPFAAGLKLAEDLSGKVDFVFEQHTESSEAAAVACPQCGKPMRRRKGGTGFFW 748

Query: 703 GCENYPKCKYT-EKLNGESNEKEI--------VGK-CPKCGSD-LYKRKGRFGEFIGCSN 751
           GC  YP C +T +  +G++  K+         VG+ CP C    L  R+     F+GC+ 
Sbjct: 749 GCSGYPDCNHTMDDKDGKAVPKQPKVARQAGKVGETCPTCQKGKLTGRQSNGTSFLGCTK 808

Query: 752 YPKCRHTEKI 761
           YP CRH E++
Sbjct: 809 YPACRHYERV 818