Pairwise Alignments

Query, 823 a.a., DNA topoisomerase I from Methanococcus maripaludis S2

Subject, 861 a.a., DNA topoisomerase III from Dechlorosoma suillum PS

 Score =  199 bits (507), Expect = 4e-55
 Identities = 245/896 (27%), Positives = 366/896 (40%), Gaps = 135/896 (15%)

Query: 4   LIICEKPNVAKKIAEALGKPKKKSHNSVPYYELERNGESIVVASAVGHLYTL--QEKTKT 61
           LII EKP+VA  IA+ALG   K       Y+E     ++ V++SA+GHL  L   E+ + 
Sbjct: 5   LIIAEKPSVAADIAKALGGFTKHDD----YFE----SDNFVLSSAIGHLLELVIPEEYEV 56

Query: 62  KFGDYPVYDINWVPASTLDEKKYIQKYIDALKKVSK-----DANKFYVATDWDIEGELIG 116
           K G +    +  +P     E K ++K    LK ++K     D +    A D   EGELI 
Sbjct: 57  KRGKWSFAHLPVIPPHF--ELKPVEKTESRLKLLTKLIKRKDVDGLVNACDAGREGELIF 114

Query: 117 YHALNFSCGQKNAHRLRFSSLTKKEILKAYEN--PNEIDFGLVDAGDSRHKIDWYFGINV 174
            +    +   K   RL   S+T + I   +      E   GL DA   R + DW  GIN 
Sbjct: 115 NYIARHAKSGKAVQRLWLQSMTPQAIRDGFARLRRGEEMQGLGDAAVCRSESDWLVGING 174

Query: 175 SRALMQAVSSVKRWKTLSTGRVQGPALAFLVDKELEIRNFVPTPYWVLEALL-------- 226
           +RA+    S    +   + GRVQ P L+ +V++E +IR F   PYW +EA          
Sbjct: 175 TRAMTAFNSKTGGFHLTTVGRVQTPTLSLVVERERKIREFKARPYWEVEATFAAAAGEYK 234

Query: 227 -----------DNDLIAVHELEKFWDEEQANKAYEKVKGQKQATVSDVKKSMKTIPPNPP 275
                      D D  A    ++ WDE +A     K +GQ      + K S +  P    
Sbjct: 235 GKWFDEAFKGKDEDEHA--RADRLWDEARAKALQAKCEGQPGEVSEEAKPSTQLSP--LL 290

Query: 276 FDLGALQREAHNMFRFSPKKTQEVAQKLYEK-GYCSYPRTSSQKLPDDKAYMDEVL---- 330
           FDL +LQREA++ F FS K T  +AQ LYEK    +YPRT S+ LP+D  Y+  V     
Sbjct: 291 FDLTSLQREANSRFGFSAKNTLGLAQALYEKHKVLTYPRTDSRALPED--YLGTVQATLQ 348

Query: 331 ----KNLSKNKN------YKPYIETILNEN----RKPISGKNDDPAHPAVHAVDVPKEKL 376
               +NL+K  +      Y  +   IL        K I        H A+       + L
Sbjct: 349 MFNGENLTKGSDTSVVDRYGIFANKILKSKWVVPNKRIFNNAKISDHFAIIPTTQAPKNL 408

Query: 377 PDDELKLYELIARRTIALYWDNAKREYSKINLDINGETFKLSGSRTVEEGWHEIY--YYT 434
            + E KLY+L+ +R +A+++  A+   +     + GE FK  G   V  GW  IY     
Sbjct: 409 SEPEQKLYDLVVKRFLAVFFPAAEYLITTRITRVAGEPFKTEGKVLVNPGWLAIYGREGQ 468

Query: 435 KFDEVELPELKKNDVINVNNINFEAKETKPPKRYTMASIIKELE---------------- 478
           + DE  L  + + + +    +     ET+PP RY+ A+++  +E                
Sbjct: 469 EGDEGNLVAVSQGEKVQTEEVAVNQNETRPPARYSEATLLSAMEGAGKMVDDEELRAAMA 528

Query: 479 KRKLGTKATRADILEKLTKRGYVIEDG----------SLTVTDLGIGVTETLRKYCPEIV 528
            R LGT ATRA I+E L    Y+  +G          SL     G+G++        E+ 
Sbjct: 529 GRGLGTPATRAQIIEGLITEQYLHREGRELIPTAKAFSLMTLLNGLGIS--------ELT 580

Query: 529 EETLTRDLEDKLELIQDKKIKKEEVIQETKDKLTKILGEFRLKEKEIGTELVDKLDSTNR 588
              LT + E KL  I+   + +   +QE ++    I+   +  + +        L S   
Sbjct: 581 SPELTGEWEWKLAQIERGDLSRSAFMQEIEEMTRHIVDRAKSYDSDTVPGDFGLLKS--- 637

Query: 589 SLQIIGKC-KCGGDMIIIRTKGKKRFVGCSNYP----------DCEVTFPLPQKGRIKVL 637
                  C KCGG   ++R   KK   G  +Y           + E    L  + ++  L
Sbjct: 638 ------PCPKCGG---LMRETYKKFQCGDCDYGLWKIVAGRQFEPEEIETLLTERQVGPL 688

Query: 638 NEVCEKCQNPVIGLDRIKICVNP--DCSTRISEEDKKEIEKAEKEEKI--CPKCGNKLLI 693
                K   P   L ++     P  D     S ED  E      +E +  CPKCG+ +  
Sbjct: 689 MGFRNKMGRPFNALIKLNDKNEPEFDFGQDRSGEDGGEPVDFSGQESLGPCPKCGSPVYE 748

Query: 694 KKGPYGVFRGCENYPKCKYT--EKLNGESNEKEIVGKCPKCG-SDLYKRKGRFGEFIGCS 750
               Y   +       C +   + +  ++ E+E + K    G +DL K      +FI   
Sbjct: 749 HGLAYVCEKSVGPAKSCDFRSGKIILQQAVEREQMQKLLSTGRTDLLK------DFISAR 802

Query: 751 NYPKCRHTEKIDKKKEDTPGETKAETKKEAKPKTTKKAAPKKTATKTTKTTAKKTA 806
              K        K  + +    K E K  A  KT  KA PK    K TK  AK+ A
Sbjct: 803 TRRKFSAFLVKGKDGKVSFEFEKREPKAPAAKKTAAKAEPKAAVEKPTKAPAKRKA 858