Pairwise Alignments

Query, 823 a.a., DNA topoisomerase I from Methanococcus maripaludis S2

Subject, 702 a.a., DNA topoisomerase III (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  144 bits (364), Expect = 1e-38
 Identities = 156/593 (26%), Positives = 247/593 (41%), Gaps = 90/593 (15%)

Query: 4   LIICEKPNVAKKIAEALGKPKKKSHNSVPYYELERNGESIVVASAVGHLYTLQEKT---- 59
           L I EKP++ + IA+ L KP KK    +     + NG    V+  VGHL    E      
Sbjct: 3   LYIAEKPSLGRAIADVLPKPHKKGEGFIE----DANGNC--VSWCVGHLLEQAEPDAYNP 56

Query: 60  ---KTKFGDYPVYDINWVPASTLDEKKYIQKYIDALKKVSKDANKFYVATDWDIEGELIG 116
                KF   P+    W     L  K   +  +  LKK+ K A+    A D D EG+L+ 
Sbjct: 57  DFKSWKFEHLPIVPEKW----QLKPKAATRSQLTVLKKLIKQADTLVNAGDPDREGQLLV 112

Query: 117 YHALNFS--CGQK--NAHRLRFSSLTKKEILKAYEN--PNEIDFGLVDAGDSRHKIDWYF 170
              + +    G K     RL  S L  + + +A      N     L  +  +R + DW +
Sbjct: 113 DEVIAYLGVTGDKLQQTQRLLISDLNPQAVKRALSQLRSNREFIPLSTSALARSRADWLY 172

Query: 171 GINVSRALMQAVSSVKRWKTLSTGRVQGPALAFLVDKELEIRNFVPTPYWVLEALLDNDL 230
           G+N++RA       V     LS GRVQ P L  +V ++ EI +F   P++ + A L  D 
Sbjct: 173 GMNMTRAYTIQGKKVGYQGVLSVGRVQTPLLGLIVRRDEEIAHFQSKPFYEVLAHLVTDK 232

Query: 231 IAVHELEKFWDEEQANKAYEKVKGQ----------------KQATVSDVKKSMKTIPPNP 274
                 +  W   +A + Y   +G+                K A V+ +    K      
Sbjct: 233 QQFFSAK--WQPSEACQPYMDDEGRVLSKGLAQNVVRRITDKPAKVTQLSTKDKQQSAPL 290

Query: 275 PFDLGALQREAHNMFRFSPKKTQEVAQKLYEK-GYCSYPRTSSQKLPDDKAYMDEVLKNL 333
           P+ L ALQ +A   F  S K+  +  Q LYE+    +YPR+ S+ LP ++  +   + N 
Sbjct: 291 PYSLSALQIDAAKRFGMSAKEVLDTCQSLYERHKLITYPRSDSRYLPTEQHGLASSVLN- 349

Query: 334 SKNKNYKPYIETILNENRKPISGKNDDPAHPAVHAVDVPKEKLPD------DELKLYELI 387
           +        +      N +  S   DD    A HA+ +P EK P+       E +LY  I
Sbjct: 350 AITSGAPELVAHSEAPNPRLKSKAWDDKKVDAHHAI-IPTEKQPNLGSLSQRERQLYLHI 408

Query: 388 ARRTIALYWDNAKREYSKINLDINGETFKLSGSRTVEEGWHEIYYYTKFDEV-------- 439
           AR+ +A ++       + + + I G  FK    +    GW +++   + +          
Sbjct: 409 ARQYLAQFYPAYCYSETAVEVTIEGGLFKTKARQDKSLGWKQLFAREEGERKDTSNTETF 468

Query: 440 --------------ELPELKKNDVINVNNINFEAKETKPPKRYTMASI----------IK 475
                         +LP L    V++ N      K+T+PPK +T A++          + 
Sbjct: 469 AQDDKDKDEGEYAGQLPPLILGQVLHCNQGELVEKQTQPPKAFTDATLLGAMTGINRYVT 528

Query: 476 ELEKRK-------LGTKATRADILEKLTKRGYVIEDG-SLTVTDLGIGVTETL 520
           + E RK       LGT+ATRA I+E L KRG++   G S+  T++G G+  +L
Sbjct: 529 DPEIRKILKETDGLGTEATRAGIIELLFKRGFIQRQGKSIVATEVGKGLINSL 581