Pairwise Alignments

Query, 823 a.a., DNA topoisomerase I from Methanococcus maripaludis S2

Subject, 878 a.a., DNA topoisomerase I (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  232 bits (591), Expect = 8e-65
 Identities = 221/808 (27%), Positives = 360/808 (44%), Gaps = 97/808 (12%)

Query: 4   LIICEKPNVAKKIAEALGKP----KKKSH-NSVPYYELERNGESIVVASAVGHLYTLQEK 58
           L+I E P  AK I + LGK         H   +P   +    E +  A+ V  +   ++ 
Sbjct: 5   LVIVESPAKAKTINKYLGKEFIVKSSVGHIRDLPTSSISDGTEKVKSAAEVKKMSPEEKA 64

Query: 59  TKTKFGDYPVY--------DINWVPASTLDEKKYIQKYIDALKKVSKDANKFYVATDWDI 110
              K  D+           +  W     +   K  +K +  L+ ++  A++ Y+ATD D 
Sbjct: 65  RYKKVKDHQALVSRMGVNPEKGWAAKYQILPGK--EKVVKELQALADSADQIYLATDLDR 122

Query: 111 EGELIGYHALNFSCGQKNAH-RLRFSSLTKKEILKAYENPNEIDFGLVDAGDSRHKIDWY 169
           EGE I +H      G  + + R+ F+ +TK  I +A+  P  +D  +V+A  +R  +D  
Sbjct: 123 EGEAIAWHLQEVIGGDPSRYQRVVFNEITKSAIQEAFSKPASLDTNMVNAQQARRFLDRV 182

Query: 170 FGINVSRALMQAVSSVKRWKTLSTGRVQGPALAFLVDKELEIRNFVPTPYWVLEALLDND 229
            G  VS  L + V+     + LS GRVQ  A+  +V++E EI+ FVP  +W + A L+  
Sbjct: 183 VGFMVSPLLWKKVA-----RGLSAGRVQSVAVRLVVERESEIKAFVPEEFWDVHAQLNTP 237

Query: 230 LIAVHELE--KFWD-------EEQANKAYEKVKGQKQATVSDVKKSMKTIPPNPPFDLGA 280
                 +E  K+ D       E+QA  A + +       ++   K+ ++  P+ PF    
Sbjct: 238 SSEALRMEVVKYLDSAFEPTNEQQALAAVQALSSASFKVIAREDKATQS-KPSAPFITST 296

Query: 281 LQREAHNMFRFSPKKTQEVAQKLYEKGYCSYPRTSSQKLPDDKAYMDEVLKNLSKNKNYK 340
           LQ+ A     F  KKT  +AQ+LYE G+ +Y RT S  L  +   +D V + + K    K
Sbjct: 297 LQQAASTRLGFGVKKTMMMAQRLYEAGHITYMRTDSTNLSQEA--LDSVREMIGKEYGAK 354

Query: 341 PYIETILNENRKPI---SGKNDDPAHPAVHAVDVPKEK-----LPDDELKLYELIARRTI 392
            Y+        +PI   S +    AH A+   +V  E      +  D  +LYELI R+ +
Sbjct: 355 -YLPA------EPIRYGSKEGAQEAHEAIRPSNVKVEAAALTDMERDAQRLYELIWRQFV 407

Query: 393 ALYWDNAKREYSKINLDINGETFKLSGSRTVEEGWHEIYYYTKFDEVE---LPELKKNDV 449
           +     A  + +K+ +       K +G     +GW  +    K    E   LP + + DV
Sbjct: 408 SCQMTPALYDATKLTVKAADYELKATGRILRFDGWTRVQTAIKKKNEEDNTLPAVNEGDV 467

Query: 450 INVNNINFEAKETKPPKRYTMASIIKELEKRKLGTKATRADILEKLTKRGYV-IEDGSLT 508
           +++  +  +   TKPP RY+ AS++KELEKR +G  +T A I+  + +RGYV +E+    
Sbjct: 468 LSLVELEPKQHFTKPPARYSEASLVKELEKRGIGRPSTYATIISTIQERGYVKVENRRFY 527

Query: 509 VTDLGIGVTETLRKYCPEIVEETLTRDLEDKLELIQDKKIKKEEVIQETKDKLTKILGEF 568
              +G  V+E L     E++    T  +E  L+ +   ++  ++V+       TK L + 
Sbjct: 528 AEKMGEIVSERLVNSFAELMSYDFTASMEQTLDDVAKGELDWKKVLDGFYADFTKQLEKA 587

Query: 569 RLKEKEIGTELVDKLDSTNRSLQIIGKCKCGGDMIIIRTKGKKRFVGCSNYPDCEVTFPL 628
            L  +E G  L       N+ +    KC   G  + IRT     F+GCS Y        L
Sbjct: 588 ELAPEEGGMRL-------NQMVMTNIKCPTCGRPMGIRTGTTGVFLGCSGY-------EL 633

Query: 629 PQKGRIKVLNEVCEKCQNPVIGLDRIKICVNPDCSTRISEEDKKEIEKAEKEEKICPKCG 688
           P K R       C+   N   G++             IS+ +  E +    + + C  CG
Sbjct: 634 PPKER-------CKTTMNLTPGIE------------AISDSEDAETDALRAKHR-CGICG 673

Query: 689 ----NKLLIKKGPYGVFRGCENYPKCKYTEKLNGESNEKEIVG---KCPKCGSDLYKRKG 741
               + LL +K    V   C N P C+  E   G+   K   G   +C +CG D+  + G
Sbjct: 674 TAMDSYLLDEKRKLHV---CGNNPVCEGYEVEEGQFKIKGYEGPLIECDRCGHDMELKNG 730

Query: 742 RFGEFIGCSNYPKCRHTEKIDKKKEDTP 769
           RFG++ GC+N  +C++T K+ K  E  P
Sbjct: 731 RFGKYFGCTN-EECKNTRKLLKNGEAAP 757