Pairwise Alignments

Query, 823 a.a., DNA topoisomerase I from Methanococcus maripaludis S2

Subject, 188 a.a., topoisomerase DNA-binding C4 zinc finger domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 99.0 bits (245), Expect = 2e-25
 Identities = 43/92 (46%), Positives = 61/92 (66%), Gaps = 3/92 (3%)

Query: 678 EKEEKICPKCGNKLLIKKGPYGVFRGCENYPKCKYTEKL-NGESNEKEIV--GKCPKCGS 734
           EKE ++CP+CG++L +K   +G F GC NYP C YT  L   ES E +++   KCP+CG 
Sbjct: 18  EKEYELCPECGSELSVKHSKHGSFIGCNNYPNCAYTRPLVQHESIETQVIEGSKCPECGH 77

Query: 735 DLYKRKGRFGEFIGCSNYPKCRHTEKIDKKKE 766
           +L  + GRFG FIGC+ YP C H E+ D++ +
Sbjct: 78  ELAVKSGRFGIFIGCTQYPSCTHIERPDQESD 109



 Score = 84.0 bits (206), Expect = 7e-21
 Identities = 50/162 (30%), Positives = 78/162 (48%), Gaps = 45/162 (27%)

Query: 597 KCGGDMIIIRTKGKKRFVGCSNYPDCEVTFPLPQKGRIKVLNEVCEKCQNPVIGLDRIKI 656
           +CG ++ +  +K    F+GC+NYP+C  T PL Q   I+                     
Sbjct: 26  ECGSELSVKHSKHGS-FIGCNNYPNCAYTRPLVQHESIE--------------------- 63

Query: 657 CVNPDCSTRISEEDKKEIEKAEKEEKICPKCGNKLLIKKGPYGVFRGCENYPKCKYTEKL 716
                  T++ E  K            CP+CG++L +K G +G+F GC  YP C + E+ 
Sbjct: 64  -------TQVIEGSK------------CPECGHELAVKSGRFGIFIGCTQYPSCTHIERP 104

Query: 717 NGESNEKEIVGKCPKCGS-DLYKRKGRFGE-FIGCSNYPKCR 756
           + ES++ ++   CP+C +  L  R  RFG+ F  CS YPKC+
Sbjct: 105 DQESDKPQVA--CPECKTGKLEHRTSRFGKGFYACSAYPKCK 144



 Score = 37.7 bits (86), Expect = 5e-07
 Identities = 37/158 (23%), Positives = 55/158 (34%), Gaps = 54/158 (34%)

Query: 595 KCKCGGDMIIIRTKGKKRFVGCSNYPDCEVTFPLPQKGRIKVLNEVCEKCQNPVIGLDRI 654
           KC   G  + +++     F+GC+ YP C                                
Sbjct: 71  KCPECGHELAVKSGRFGIFIGCTQYPSC-------------------------------- 98

Query: 655 KICVNPDCSTRISEEDKKEIEKAEKEEKICPKC-GNKLLIKKGPYGV-FRGCENYPKCKY 712
                    T I   D    ++++K +  CP+C   KL  +   +G  F  C  YPKCK+
Sbjct: 99  ---------THIERPD----QESDKPQVACPECKTGKLEHRTSRFGKGFYACSAYPKCKF 145

Query: 713 TEKLNGESNEKEIVGKCPKCG-SDLYKRKGRFGEFIGC 749
                   N   +   CP CG   L +RKG  G  + C
Sbjct: 146 I------VNYPPVGETCPSCGFGILVERKGAAGMRLEC 177