Pairwise Alignments

Query, 823 a.a., DNA topoisomerase I from Methanococcus maripaludis S2

Subject, 180 a.a., DNA topoisomerase type IA zn finger domain-containing protein from Klebsiella michiganensis M5al

 Score = 94.7 bits (234), Expect = 4e-24
 Identities = 43/92 (46%), Positives = 60/92 (65%), Gaps = 4/92 (4%)

Query: 679 KEEKICPKCGNKLLIKKGPYGVFRGCENYPKCKYTEKLNGESNE---KEIVGK-CPKCGS 734
           ++ + CP+CG +L+I+ G +G F GC +YP C Y   L  +++    K + G+ CP CG+
Sbjct: 10  RKNEPCPQCGAELVIRSGKHGPFLGCSHYPDCDYVRPLKSQADGHIVKVLEGQTCPSCGA 69

Query: 735 DLYKRKGRFGEFIGCSNYPKCRHTEKIDKKKE 766
            L  R+GRFG FIGCS+YP C HTE IDK  E
Sbjct: 70  VLVLRQGRFGMFIGCSSYPDCEHTELIDKPDE 101



 Score = 76.6 bits (187), Expect = 1e-18
 Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 51/165 (30%)

Query: 597 KCGGDMIIIRTKGKKRFVGCSNYPDCEVTFPLPQKGR---IKVLNEVCEKCQNPVIGLDR 653
           +CG +++I R+     F+GCS+YPDC+   PL  +     +KVL                
Sbjct: 17  QCGAELVI-RSGKHGPFLGCSHYPDCDYVRPLKSQADGHIVKVL---------------- 59

Query: 654 IKICVNPDCSTRISEEDKKEIEKAEKEEKICPKCGNKLLIKKGPYGVFRGCENYPKCKYT 713
                                     E + CP CG  L++++G +G+F GC +YP C++T
Sbjct: 60  --------------------------EGQTCPSCGAVLVLRQGRFGMFIGCSSYPDCEHT 93

Query: 714 EKLNGESNEKEIVGKCPKCG-SDLYKRKGRFGE-FIGCSNYPKCR 756
           E ++      E    CP+CG   L +R+ RFG+ F  C  YP C+
Sbjct: 94  ELID---KPDETAIACPQCGQGHLVQRRSRFGKNFHSCDRYPDCQ 135



 Score = 45.4 bits (106), Expect = 2e-09
 Identities = 31/139 (22%), Positives = 53/139 (38%), Gaps = 54/139 (38%)

Query: 596 CKCGGDMIIIRTKGKKRFVGCSNYPDCEVTFPLPQKGRIKVLNEVCEKCQNPVIGLDRIK 655
           C   G ++++R      F+GCS+YPDCE T                              
Sbjct: 64  CPSCGAVLVLRQGRFGMFIGCSSYPDCEHT------------------------------ 93

Query: 656 ICVNPDCSTRISEEDKKEIEKAEKEEKICPKCGNKLLI-KKGPYGV-FRGCENYPKCKYT 713
                           + I+K ++    CP+CG   L+ ++  +G  F  C+ YP C++ 
Sbjct: 94  ----------------ELIDKPDETAIACPQCGQGHLVQRRSRFGKNFHSCDRYPDCQFV 137

Query: 714 EKLNGESNEKEIVGKCPKC 732
                  N + + G+CP+C
Sbjct: 138 ------INFRPVAGECPEC 150