Pairwise Alignments

Query, 823 a.a., DNA topoisomerase I from Methanococcus maripaludis S2

Subject, 760 a.a., DNA topoisomerase I (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  225 bits (574), Expect = 6e-63
 Identities = 195/765 (25%), Positives = 326/765 (42%), Gaps = 126/765 (16%)

Query: 40  GESIVVASAVGHLYTLQEKTKTKFGDYPVYDI------NWVPASTLDEKKYIQKYIDALK 93
           G   VV ++VGH+            D P  +I      N+ P   + + K  QK +D L+
Sbjct: 22  GGKYVVQASVGHVR-----------DLPTNEIGVDEANNFAPQYRVIDGK--QKVVDTLR 68

Query: 94  KVSKDANKFYVATDWDIEGELIGYHALNFSCGQK-NAHRLRFSSLTKKEILKAYENPNEI 152
           + +  A+  Y+A D D EGE I +H      G+  N  R++F+ +T + + +A ENP ++
Sbjct: 69  EAAAKADTVYLAPDPDREGEAIAWHVAALIEGKADNIKRIQFNEITARAVREALENPRDL 128

Query: 153 DFGLVDAGDSRHKIDWYFGINVSRALMQAVSSVKRWKTLSTGRVQGPALAFLVDKELEIR 212
           +  L DA  +R  +D   G  +S  L + V      + +S GRVQ  AL  +VD+E E R
Sbjct: 129 NRALFDAQQARRVLDRLVGYKLSPLLWKKVK-----RGISAGRVQSVALRLIVDRESERR 183

Query: 213 NFVPTPYWVLEALLDNDLIAVH-------------ELEKF-------WDEEQANKAYEKV 252
            F P  YW+  A+   ++                 EL K         D + AN   + +
Sbjct: 184 AFTPEEYWLFRAMFAKNVPGATPTSPDPQYAPFKAELAKIDGKKAHVADADAANALEDAM 243

Query: 253 KGQKQATVSDVKKSMKTIPPNPPFDLGALQREAHNMFRFSPKKTQEVAQKLYEK------ 306
           +G K   ++ V++  +   P PPF    LQ+ A+    +S K+T  +AQ+LYE       
Sbjct: 244 RG-KPFVITAVERKKRERQPQPPFITSTLQQAANQRLGYSAKRTMNIAQRLYEGVELGEM 302

Query: 307 ---GYCSYPRTSSQKLPDDKAYMDEVLKNLSKNKNYKPYIETILNENRKPISGKNDDPAH 363
                 +Y RT S ++ D+           +   ++ P         +    G   D AH
Sbjct: 303 GTVALITYMRTDSVRVSDEARDAARAFVTETWGADFCP-----AKPRQFKTKGSAQD-AH 356

Query: 364 PAVHAVDVP------KEKLPDDELKLYELIARRTIALYWDNAKREYSKINLDINGETFKL 417
            AV  VDV       K  LP D+ +LY L+  R +A     A+ + + + +      ++ 
Sbjct: 357 EAVRPVDVNVTPDSVKHLLPPDQFQLYRLVWSRFVASQMAPARFDDTTVAIACGPAEWRA 416

Query: 418 SGSRTVEEGWHEIYYYTKFDEVELPELKKNDVINVNNINFEAKETKPPKRYTMASIIKEL 477
            G R +  G+       +  + ELP L++ + ++  ++  E K T+PP RYT AS+++EL
Sbjct: 417 KGERMLFPGFLAAMPQKEEGDAELPPLQEGETLHPVSVEKEQKFTQPPARYTEASLVREL 476

Query: 478 EKRKLGTKATRADILEKLTKRGYV-IEDGSLTVTDLGIGVTETLRKYCPEIVEETLTRDL 536
           E+R +G  +T A I+  L  R Y  +ED     TDLG  V + L ++   +++   T  +
Sbjct: 477 EERGIGRPSTYASIISTLIDRDYTRLEDKHFVPTDLGATVCDLLARHFTTLMDVGFTAQM 536

Query: 537 EDKLELIQDKKIKKEEVIQETKDKLTKILGEFRLKEKEIGTELVDKLDSTNRSLQIIGKC 596
           ED L+ + +  +   E           +L  F              +++    L     C
Sbjct: 537 EDSLDKVAEGGLDWVE-----------LLSRFSADFNPTLESAAKAMETVKGGLPTDVTC 585

Query: 597 KCGGDMIIIRTKGKKRFVGCSNYPDCEVT--FPLPQKGRIKVLNEVCEKCQNPVIGLDRI 654
              G  ++++      F+ C+ YPDC+ T  F   +KG I                    
Sbjct: 586 PECGKPVVVKFGKAGPFLACTAYPDCKFTSNFSRDEKGDIV------------------- 626

Query: 655 KICVNPDCSTRISEEDKKEIEKAEKEEKICPKCGNKLLIKKGPYGV-FRGCENYPKCKYT 713
                      I +  ++E+E        CP+CG  L++KK   G  F  C  YP C++T
Sbjct: 627 -----------IEQRAREELEAV----GTCPECGKDLVVKKARTGSRFIACTGYPDCRHT 671

Query: 714 EKLNGESNEKEIVGKCPK--CGSDLYKRKGRFGE-FIGCSNYPKC 755
           E  +           CP+  C   L ++  + G+ F  C+ +PKC
Sbjct: 672 EPFSTGI-------ACPREGCDGQLVEKSSKRGKIFYSCNRFPKC 709



 Score = 42.0 bits (97), Expect = 1e-07
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 4/71 (5%)

Query: 729 CPKCGSDLYKRKGRFGEFIGCSNYPKCRHTEKIDK-KKEDTPGETKAETKKEAK---PKT 784
           CP+CG  +  + G+ G F+ C+ YP C+ T    + +K D   E +A  + EA    P+ 
Sbjct: 585 CPECGKPVVVKFGKAGPFLACTAYPDCKFTSNFSRDEKGDIVIEQRAREELEAVGTCPEC 644

Query: 785 TKKAAPKKTAT 795
            K    KK  T
Sbjct: 645 GKDLVVKKART 655