Pairwise Alignments

Query, 823 a.a., DNA topoisomerase I from Methanococcus maripaludis S2

Subject, 862 a.a., DNA topoisomerase III (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  129 bits (323), Expect = 9e-34
 Identities = 112/377 (29%), Positives = 172/377 (45%), Gaps = 37/377 (9%)

Query: 256 KQATVSDVKKSMKTIPPNPPFDLGALQREAHNMFRFSPKKTQEVAQKLYE-KGYCSYPRT 314
           K   V  V+    T  P  PFDL  LQREA+  F +S K T   AQ LYE +   +YPRT
Sbjct: 357 KLGIVESVQGRAGTQQPPLPFDLTTLQREANTRFGYSAKDTLTHAQSLYETRKLITYPRT 416

Query: 315 SSQKLPDDKAYMDEVLKNLSKNKNYKPYIETILNENRKPISGKN-----DDPAHPAVHAV 369
            S+ L   K    E+L +L    +  P  ET+L   R   SGK      DD      HA+
Sbjct: 417 DSRHLT--KELFGEILNHLRAVHHLYPE-ETMLAVGRIK-SGKARFACVDDRKVTDHHAI 472

Query: 370 DVPKEK-----LPDDELKLYELIARRTIALYWDNAKREYSKINLDINGETFKLSGSRTVE 424
                K     L   E  +Y+++ RRTIA +   AK   S + + +    F   G    +
Sbjct: 473 IPTARKGNLTQLSAPERNIYDMVCRRTIAAFCPEAKFSTSTVTVMVGEHPFIAKGKVFKD 532

Query: 425 EGWHEIYYYTKFDEVELPELKKNDVINVNNINFEAKETKPPKRYTMASIIKELE------ 478
           +GW  +  +   ++  LP+L+K   +   ++    ++TK P  +T AS++  +E      
Sbjct: 533 KGWMVVEPWRTAEDTPLPQLRKGSKLLTLDVGPVKRQTKAPAHFTDASLLAAMETAGRLV 592

Query: 479 ----------KRKLGTKATRADILEKLTKRGYVIEDG-SLTVTDLGIGVTETLRKYCPEI 527
                     +R LGT ATRA ++E L  RGYV + G  L  TD G+ V ET+    P++
Sbjct: 593 EDDALRQAMKERGLGTPATRAQVIETLVARGYVAKQGKKLVATDRGMQVAETVTTLLPDV 652

Query: 528 VEETLTRDLEDKLELIQDKKIKKEEVIQETKDKLTKILGEFRLKEKEIGTELVDKLDSTN 587
               LT   E +L+ I+         ++  ++ +    G  R++ ++I   L D     +
Sbjct: 653 ASPELTGQWEKRLKDIEAGADSYPAFMRSIRESVWH--GVHRIRNRDIRPLLRDIAARNS 710

Query: 588 RSLQIIGKCK-CGGDMI 603
           R     G+C  CGGD++
Sbjct: 711 RPPD--GRCPLCGGDVV 725



 Score = 79.0 bits (193), Expect = 1e-18
 Identities = 74/246 (30%), Positives = 111/246 (45%), Gaps = 39/246 (15%)

Query: 4   LIICEKPNVAKKIAEALGKPKKKSHNSVPYYELERNGESIVVASAVGHLYTLQEKTKTKF 63
           LII EKP+VA++IA  +G   +++     Y E    G   +V+ AVGHL  + E  +   
Sbjct: 5   LIIAEKPSVAREIAPLVGAQGRRAG----YLE----GPDHLVSWAVGHLVGIAEPEEQ-- 54

Query: 64  GDYPVYDINWVPASTLDEKKYIQKYIDALKKVSKDANKFYV---------------ATDW 108
                 D  W    TL++   +      L+ + + A++F V               ATD 
Sbjct: 55  ------DEAWAGRWTLEQLPMLPPRFQ-LRVLPETADQFSVLQRLLLDDRVTGIVNATDA 107

Query: 109 DIEGELIGYHALNFSCGQKNAHRLRFSSLTKKEILKAYEN--PNEIDFGLVDAGDSRHKI 166
             EGELI       +   K   RL  S +T++ + K+     P+E    L  A  +R + 
Sbjct: 108 GREGELIFRRIYLVAGCDKPVRRLWASDMTEEGLRKSLARLLPDEEKRNLGLAAFARAEA 167

Query: 167 DWYFGINVSRALMQAVSSVKRWKTLSTGRVQGPALAFLVDKELEIRNFVPTPYWVLEALL 226
           DW  G+N SR       +VK    +S GRVQ P L  L D+  +I +F P  +W +EA  
Sbjct: 168 DWLVGMNFSRLF-----TVKSGGLVSVGRVQTPVLCLLADRRRDIEHFTPQDFWTVEATF 222

Query: 227 DNDLIA 232
           D +L A
Sbjct: 223 DKNLDA 228