Pairwise Alignments

Query, 823 a.a., DNA topoisomerase I from Methanococcus maripaludis S2

Subject, 586 a.a., DNA topoisomerase I (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  199 bits (507), Expect = 3e-55
 Identities = 160/585 (27%), Positives = 274/585 (46%), Gaps = 55/585 (9%)

Query: 5   IICEKPNVAKKIAEALGKPKKKSHNSVPYYELERNGESIVVASAVGHLYTLQEKT----- 59
           I+ +KPNV K+IA  LG     +H     Y    +G   +V    G++ +L         
Sbjct: 4   ILTDKPNVGKEIARILG-----AHTREDGY---MSGNGYMVTWTFGNMLSLAMPKDYGMD 55

Query: 60  KTKFGDYPVY-------------DINWVP-ASTLDEKKYIQKYIDALKKVSKDANKFYVA 105
           + + GD+P+              D  W+P  + + + K I+K  DA + +         A
Sbjct: 56  RPERGDFPINPAPFRLMVKHIKTDTGWIPDINAVLQLKVIEKVFDACESI-------IAA 108

Query: 106 TDWDIEGELIGYHALNFSCGQKNAHRLRFSSLTKKEILKAYEN--PNEIDFGLVDAGDSR 163
           TD   EGE++  +   +   +K+  RL  SSLT + +L+  +N  P  +   +  A DSR
Sbjct: 109 TDASREGEMVFRYLYRYLECRKSYRRLWISSLTDEAVLEGMDNLRPGSLYDHMFLAADSR 168

Query: 164 HKIDWYFGINVSRALMQAVSSVKRWKTLSTGRVQGPALAFLVDKELEIRNFVPTPYWVLE 223
           +K DW  G+N S AL QA  +       S GRVQ P LA +  +  E  N + T  + + 
Sbjct: 169 NKADWVLGLNASYALCQATGTGNN----SLGRVQTPILAAISSRYRERENHIATDTFPVF 224

Query: 224 ALL--DNDLIAVHELEKFWDEEQANKAYEKVKGQKQATVSDVKKSMKTIPPNPPFDLGAL 281
             L  +N L+ +   E+F D E A + Y   K    A V+ V + ++ I P   ++L  L
Sbjct: 225 ISLCKNNTLLKMRCTEEFTDREAAARLYSDCKLAGHARVTAVSRQVREIEPPALYNLTEL 284

Query: 282 QREAHNMFRFSPKKTQEVAQKLYEKGYCSYPRTSSQKLPDD-KAYMDEVLKNLSKNKNYK 340
           Q++A+N +  +  K+ E+AQKLYEK   SYPRT+ + LP D    +  +++ +   K ++
Sbjct: 285 QKDANNYYGMTAGKSLEIAQKLYEKKLISYPRTAGRFLPRDVYDKLPRIMEKILNRKEFR 344

Query: 341 PYIETI---LNENRKPISGKNDDPAHPAVHAVDVPKEKLPDDELKLYELIARRTIALYWD 397
           PY+ ++   + +    +  +     H A+   D   E L  +E++LY +I  R +  +  
Sbjct: 345 PYVRSMGINIFDLPDKVVDEGQAAEHHAIIITDTYPEGLNREEMQLYMMIIGRMLEAFMP 404

Query: 398 NAKREYSKINLDINGETFKLSGSRTVEEGWHEIYYY------TKFDEVELPELKKNDVIN 451
             + EY+ ++       F+    R +E+GW  I+         ++    +P+L+  +   
Sbjct: 405 VCRAEYTTVDAVCAARNFRCHACRIIEKGWFGIFERESVIAGREYGFSPIPQLENGETAA 464

Query: 452 VNNINFEAKETKPPKRYTMASIIKELEKRKLGTKATRADILEKLTKRGYVIEDGSLTV-T 510
           V   +   ++      YT A +I  ++   LGT ATR  IL+ L  R YV   G   + T
Sbjct: 465 VTGCSLIHRKDLTVSAYTDAELITYMDTAGLGTAATRTGILQTLIDRKYVRYSGKYIIPT 524

Query: 511 DLGIGVTETLRKYCPEIVEETLTRDLEDKLELIQDKKIKKEEVIQ 555
             G+ + ET+R    +I E  LT   E +L  ++  K+ +EE ++
Sbjct: 525 RKGLYIYETVRNM--KIAETALTSGWEAQLARMERGKLTQEEFMK 567