Pairwise Alignments

Query, 823 a.a., DNA topoisomerase I from Methanococcus maripaludis S2

Subject, 693 a.a., DNA topoisomerase I (Omega-protein) (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  200 bits (508), Expect = 3e-55
 Identities = 196/664 (29%), Positives = 296/664 (44%), Gaps = 80/664 (12%)

Query: 5   IICEKPNVAKKIAEALGKPKKKSHNSVPYYELERNGESIVVASAVGHL--------YTLQ 56
           +I EKP+VA+ IA  LG  +K+            +G   +V  A GHL        Y +Q
Sbjct: 4   VIGEKPSVARDIARILGASEKQDGYL--------SGNGYLVTWAFGHLVGLAMPEAYGIQ 55

Query: 57  EKTKTKFGDYPVYDINWVPASTLDEKKY-----IQKYIDALKKVSKDANKFYVATDWDIE 111
              +      P       P     EK Y       K +  +K V   ++K  VATD   E
Sbjct: 56  SFRRESLPIIPD-SFQLTPRQVKAEKGYKADPGALKQLKVIKDVFDQSDKIIVATDAGRE 114

Query: 112 GELIGYHALNFSCGQKNAHRLRFSSLTKKEILKAYEN--PNEIDFGLVDAGDSRHKIDWY 169
           GELI  +  N+    K   RL  SSLT K I +  +N     +   L  +  +R + D+ 
Sbjct: 115 GELIFRYIYNYIGCNKPFVRLWISSLTDKSIREGLQNLKAGSLYDNLFLSAQARSEADYL 174

Query: 170 FGINVSRALMQAVSSVKRWKTLSTGRVQGPALAFLVDKELEIRNFVPTPYWVL--EALLD 227
            GIN ++AL  A          S GRVQ P LA +  + LE +NFVP  YW L  +A  D
Sbjct: 175 IGINGTQALSVAAGQ----GIFSLGRVQSPTLAMICTRFLENKNFVPQKYWQLKLQAAKD 230

Query: 228 NDLIAVHELEKFWDEEQANKAYEKVKGQKQATVSDVKKSMKTIPPNPP--FDLGALQREA 285
           N   A    +K   ++ A    +++K  +   V  V++  K +   PP  +DL  LQ+EA
Sbjct: 231 NVSFAALSTDKCDKQQPAIDTLQRIKEAETVQVKTVER--KEVNQEPPLLYDLTTLQKEA 288

Query: 286 HNMFRFSPKKTQEVAQKLYEKGYCSYPRTSSQKLPDDKAYMDEVLKNLSKNKNYKPYIET 345
           +    FS  KT  +AQKLYE    SYPRT S+ +  D    +E+ + L   + Y  +   
Sbjct: 289 NTKLNFSADKTLSIAQKLYEGKLISYPRTGSRYISQD--VFEEIPERLVNLEQYTRFGGY 346

Query: 346 ILNENRKPISGKNDDPAHPAVHAVDVPKEKLPD----DELKLYELIARRTIALYWDNAKR 401
                 K ++ ++ +      H   +  E LPD    DE  +YELIA R +  + +   +
Sbjct: 347 AAGMKGKALNSRSVNDGKVTDHHALIVTENLPDKMEADEQAIYELIAGRMLEAFSEKCVK 406

Query: 402 EYSKINLDINGETFKLSGSRTVEEGWHEIYYYTK--FDEVELPELKKNDVINVNNINFEA 459
           + + + L+  G  F + GS     GW  ++   +   D   LP ++  D + ++ I    
Sbjct: 407 DVTSVTLECAGSLFTVKGSVIKSAGWRAVFGEKEDGEDNAALPAMQDGDSLPLSGIELLE 466

Query: 460 KETKPPKRYTMASII-------KELEKRKL---------GTKATRADILEKLTKRGYVI- 502
           K+TKP   +T +S++       KELE   L         GT ATRA I+E L  R Y++ 
Sbjct: 467 KQTKPKPLHTESSLLSSMETAGKELENADLKASMKDTGIGTPATRAAIIETLFSRQYIVR 526

Query: 503 EDGSLTVTDLGIGVTETLRKYCPEIVEETLTRDLEDKLELIQDKKIKKEEVIQETKDKLT 562
           E  +L  T+ G+ V   +R    +I +  +T   E+ L      KI+  E+  +T  K  
Sbjct: 527 EKKNLVPTEKGLTVYNIIRD--KKIADVEMTGMWENTL-----AKIESGEMNPDTFRKGI 579

Query: 563 KILGEFRLKEKEIGTELVD-KLDSTNRSLQIIGKCKCGGDMIIIRTKGKKRFVGCSNYPD 621
           ++        ++I  EL+D +L   + S  I  KCK G   I+   K  K    CSN  D
Sbjct: 580 EVYA------RQITAELLDVQLSFVSGSGCICPKCKTG--RILFYPKVAK----CSNV-D 626

Query: 622 CEVT 625
           C VT
Sbjct: 627 CSVT 630