Pairwise Alignments

Query, 823 a.a., DNA topoisomerase I from Methanococcus maripaludis S2

Subject, 704 a.a., DNA topoisomerase III (RefSeq) from Shewanella sp. ANA-3

 Score =  146 bits (368), Expect = 5e-39
 Identities = 152/593 (25%), Positives = 241/593 (40%), Gaps = 90/593 (15%)

Query: 4   LIICEKPNVAKKIAEALGKPKKKSHNSVPYYELERNGESIVVASAVGHLYTLQEKT---- 59
           L I EKP++ + IA+ L KP KK    +       + +   V+  VGHL    E      
Sbjct: 3   LYIAEKPSLGRAIADVLPKPHKKGDGFI------EDAQGNCVSWCVGHLLEQAEPDAYNP 56

Query: 60  ---KTKFGDYPVYDINWVPASTLDEKKYIQKYIDALKKVSKDANKFYVATDWDIEGELIG 116
                KF   P+    W     L  K   +  +  LKK+ K A+    A D D EG+L+ 
Sbjct: 57  EFKSWKFEHLPIVPEKW----QLKPKAATRSQLTVLKKLVKQADTLVNAGDPDREGQLLV 112

Query: 117 YHALNFS--CGQK--NAHRLRFSSLTKKEILKAYEN--PNEIDFGLVDAGDSRHKIDWYF 170
              + +    G K     RL  S L  + + +A      N     L  +  +R + DW +
Sbjct: 113 DEVIAYLGVTGDKLQQTQRLLISDLNPQAVKRALSQLRSNREFIPLSTSALARSRADWLY 172

Query: 171 GINVSRALMQAVSSVKRWKTLSTGRVQGPALAFLVDKELEIRNFVPTPYWVLEALLDNDL 230
           G+N++RA       V     LS GRVQ P L  +V ++ EI NF   P++ + A L  D 
Sbjct: 173 GMNMTRAYTIQGKKVGYQGVLSVGRVQTPLLGLIVRRDEEIANFQSKPFYEVLAHLVTDK 232

Query: 231 IAVHELEKFWDEEQANKAYEKVKGQ----------------KQATVSDVKKSMKTIPPNP 274
                 +  W   +A   Y   +G+                K A V+ +    K   P  
Sbjct: 233 DQTFTAK--WQPSEACLPYMDEEGRVLAKGLAQNVVRRITDKPAKVTQLSTKDKQQNPPL 290

Query: 275 PFDLGALQREAHNMFRFSPKKTQEVAQKLYEK-GYCSYPRTSSQKLPDDKAYMDEVLKNL 333
           P+ L ALQ +A   F  S K   +  Q LYE+    +YPR+ S+ LP ++  +   +  L
Sbjct: 291 PYSLSALQIDAAKRFGMSAKDVLDTCQSLYERHKLITYPRSDSRYLPTEQHALASGV--L 348

Query: 334 SKNKNYKPYIETILNENRKPISGKNDDPAHPAVHAVDVPKEKLPD------DELKLYELI 387
           +      P +          +  K  D      H   +P EK P+       E +LY  I
Sbjct: 349 AAIMGGAPELVAHAEAPNPRLKSKAWDDKKVDAHHAIIPTEKQPNLAGLSQRERQLYLHI 408

Query: 388 ARRTIALYWDNAKREYSKINLDINGETFKLSGSRTVEEGWHEIYYYTKFDEV-------- 439
           AR+ +A ++       + + + I G  FK    +    GW +++   + +          
Sbjct: 409 ARQYLAQFYPAYCYSETAVEVTIEGGLFKTKAKQDKSLGWKQLFAREENERKDASSAASF 468

Query: 440 --------------ELPELKKNDVINVNNINFEAKETKPPKRYTMASIIKEL-------- 477
                         +LP L    V++ +      K+T+PPK +T A+++  +        
Sbjct: 469 AQGDKDAEEGEYVGQLPPLTLGQVLHCHQGELVEKQTQPPKAFTDATLLSAMTGINRYVT 528

Query: 478 --EKRK-------LGTKATRADILEKLTKRGYVIEDG-SLTVTDLGIGVTETL 520
             E RK       LGT+ATRA I+E L KRG++   G S+  T++G G+  +L
Sbjct: 529 DPEIRKILKETDGLGTEATRAGIIELLFKRGFIQRQGKSIVATEIGKGLINSL 581