Pairwise Alignments

Query, 336 a.a., AI-2E family transporter from Methanococcus maripaludis S2

Subject, 361 a.a., permease PerM, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 67.0 bits (162), Expect = 7e-16
 Identities = 73/311 (23%), Positives = 135/311 (43%), Gaps = 22/311 (7%)

Query: 14  VLISFLSVMIIAFPFLDTIAFACAFAYMTE-PFFSALKKYTGRTLGAILCILMITVPAII 72
           +L+    V+  A   L  +  A   A++ E P    LK    RT  A L +++     ++
Sbjct: 24  ILVGLALVLYFAGGLLAPLLVALVLAFLLEWPVAQMLKLGINRTTAASLVLIIFLGIVVL 83

Query: 73  LVFLILTDIFEFLNSL--DYAGFVDYTVQFINYIGLQN---IAKEDLSSILSEIWNFLKP 127
           L F ++  ++    SL  D    +D  +Q +  +  Q    I+ E L+ +++E+   L  
Sbjct: 84  LTFGLIPSVWRQGVSLMTDLPSMIDKGLQTVQGLATQYPQFISVEQLNLMVAELKKLLDT 143

Query: 128 T-VNKMAGQIYG----LPLLFIKGLVTVFLTYYFLKDGYRFKDAVMPHVPEVYHVQTELF 182
             V  +A Q+ G    L +L +  ++   L ++FLKD    KD ++      +    +L 
Sbjct: 144 QHVLDIAKQLIGYSASLLVLMVYAILVPLLVFFFLKD----KDQLISGSKRFFPTNRQLA 199

Query: 183 IR---KLHEAYKNLFVVNALTAFTVGLISIAGFWAIGLPNPVTLGALSGILTLLPIVGGW 239
            +   ++H+   N      +    VG+ S   F  +GL     LG L+G+  L+P VG  
Sbjct: 200 RKVWFEMHQQIFNYIRGKVIEIVIVGVASYILFAFMGLSYSALLGVLTGLSVLIPYVGAT 259

Query: 240 TIYMPLS-VYYIAVGMYSK-AILLFGFGVLFLSLAPDFVIRPRLVNHESSIHPAFALVAF 297
            + +P+  V +   G  S+   L+ G+G+  +      V+ P L +    +HP   + A 
Sbjct: 260 LVTLPIMLVAFFQWGFSSEFGYLMLGYGI--IQALDGNVLVPILFSDAVDLHPVIIIAAV 317

Query: 298 LMGPLALGITG 308
           L+     G+ G
Sbjct: 318 LVFGGLWGVLG 328