Pairwise Alignments

Query, 278 a.a., shikimate dehydrogenase from Methanococcus maripaludis S2

Subject, 287 a.a., shikimate 5-dehydrogenase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  116 bits (290), Expect = 6e-31
 Identities = 87/279 (31%), Positives = 139/279 (49%), Gaps = 19/279 (6%)

Query: 11  LIGHPVDHSFSPIMHN--AAIKDLKINYRYFA--FDVSEENLKDVVAGAKAFNFRGFNIT 66
           + GHP+ HS SP +H   AA+    + Y       D  E +LK   +       +G N+T
Sbjct: 13  VFGHPIGHSKSPFIHGQFAALTQESLTYEAILAPIDGFEASLKSFFSSGG----KGANVT 68

Query: 67  IPHKMNIMKYLDEIDCDAEAIGAVNTVKI-ENGKAIGYNTDGIGVKKALEEKTGILINKN 125
           +P K       D +  +A   GAVNT+ +  +G   G NTDG+G+   L    G L +K 
Sbjct: 69  VPFKEQAFALCDSLSAEAALAGAVNTLSLLADGSIRGDNTDGLGLVADLISHLGSLQHKR 128

Query: 126 ILIIGSGGASRAVSFEL--AKDNNLTIVNRNIEKAENLSKEISRKLKK---ENPLNYGGL 180
           +L++G+GGA+R     L  A    L I NR   KA++L  +I  +L++   ++ L    +
Sbjct: 129 VLLVGAGGAARGCILPLLNAGVGQLVITNRTQTKAKDLV-DIFSQLEEGIYKDKLQALSM 187

Query: 181 DINIENFDIIINTTPVGMYPHTEVEPVIPLNNIKKDAVVMDLIYNPLEPVFLKEAKKYGA 240
                 F+++IN+T   +       P +P + I    V  D++Y  +   F + A + GA
Sbjct: 188 SELTGEFELVINSTSASLAGEL---PPLPQSIIGSTTVCYDMMYGAMPTAFNQWALQQGA 244

Query: 241 -KTINGIGMLVYQGAVSFEIWTGIKPDIFVMKKSIISKI 278
            K I+G+GMLV Q A SF +W  ++PD  V+ K +  K+
Sbjct: 245 AKVIDGLGMLVGQAAKSFALWRTVEPDTAVVLKLLREKL 283