Pairwise Alignments

Query, 278 a.a., shikimate dehydrogenase from Methanococcus maripaludis S2

Subject, 248 a.a., shikimate dehydrogenase (EC 1.1.1.25) (from data) from Bacteroides thetaiotaomicron VPI-5482

 Score =  139 bits (349), Expect = 8e-38
 Identities = 94/258 (36%), Positives = 140/258 (54%), Gaps = 23/258 (8%)

Query: 10  GLIGHPVDHSFSPIMHNAAIKDLKINYRYFAFDVSEENLKDVVAGAKAF-NFRGFNITIP 68
           GLIG+P+ HSFS    N   +   IN  Y  F++   N+ D +   +   N  G N+TIP
Sbjct: 5   GLIGYPLRHSFSIGYFNEKFRSEGINAEYVNFEIP--NINDFMEVIEENPNLCGLNVTIP 62

Query: 69  HKMNIMKYLDEIDCDAEAIGAVNTVKIENG-----KAIGYNTDGIGVKKALEEKTGILIN 123
           +K  ++ +L+E+D D   IGAVN +KI        K +GYN+D IG  ++++       +
Sbjct: 63  YKEQVIPFLNELDRDTAKIGAVNVIKIIRQPKGKVKLVGYNSDIIGFTQSIQPLLQPQ-H 121

Query: 124 KNILIIGSGGASRAVSFELAKDNNLTIVNRNIEKAENLSKEISRKLKKENPLNYGGLDIN 183
           K  LI+G+GGAS+AV   L         N  IE     S  +SR  K ++ L Y  L   
Sbjct: 122 KKALILGTGGASKAVYHGLK--------NLGIE-----SVFVSRTHKTDDMLTYEELTPE 168

Query: 184 I-ENFDIIINTTPVGMYPHTEVEPVIPLNNIKKDAVVMDLIYNPLEPVFLKEAKKYGAKT 242
           I E + +I+N TPVGMYP  +  P IP   +  + ++ DL+YNP   +F+K+ +  GA T
Sbjct: 169 IMEEYTVIVNCTPVGMYPKVDFCPNIPYELLTPNHLLYDLLYNPNVTLFMKKGEAQGAVT 228

Query: 243 INGIGMLVYQGAVSFEIW 260
            NG+ ML+ Q   ++EIW
Sbjct: 229 KNGLEMLLLQAFAAWEIW 246