Pairwise Alignments

Query, 467 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 541 a.a., Methyl-accepting chemotaxis protein from Pseudomonas fluorescens FW300-N2E2

 Score =  111 bits (277), Expect = 7e-29
 Identities = 82/304 (26%), Positives = 158/304 (51%), Gaps = 42/304 (13%)

Query: 182 VRAEETSEQVADAASQVATAAADQSAKLQDVSDQLE-----------ATSEITSAVTDAA 230
           V   +T EQ+A +A+Q+  AA + SA  Q+ S  L+           A +E+T+AV + A
Sbjct: 257 VSLRQTIEQIAGSATQLGAAAQELSAVTQESSRGLQQQHNEIEQAATAVNEMTAAVEEVA 316

Query: 231 DDTVT---AAIEIEENSEMGVKKVENAIETMQSITNVIENLGKAIQELGNESKKINEVTV 287
            + V+   A+ +  + ++ G  +V   ++ +Q++T+ ++     I+ L  + + I +V  
Sbjct: 317 RNAVSTSEASNQSTQAAQEGRTRVVETVDAIQTMTHDVQATASMIEGLAVQGRDIGKVLD 376

Query: 288 LIKDVAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINRTINGVNR 347
           +I+ +AEQT LLALNA+IEAARAG+AG+GFAVVA E+++LA    +S ++I + + G+  
Sbjct: 377 VIRAIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRALAHRTAQSTQEIEKMVAGI-- 434

Query: 348 KVEATIDLGISGKDEVDKGVIAIDEVNGAFLKIKESVETTSEKINSIKVNAERAVNNVET 407
                       ++   + V ++ + N       +  ++T E   +  V  E+   ++  
Sbjct: 435 ------------QNGTGQAVQSMQQSN-------QRTQSTLEMARAAGVALEQITQSIHQ 475

Query: 408 ALKDSQDIASISEEFAATAEELTAS-------AEEQSRIMNEIDDAIEEITKSSEQISKD 460
             + +  IAS SEE A  + E+  +       A + +    +  DA  E+++ +  ++  
Sbjct: 476 INERNLVIASASEEQAQVSREVDRNLVNIRDLATQSASGAKQTSDATHELSRLAVGLNAM 535

Query: 461 VSKF 464
           V++F
Sbjct: 536 VARF 539



 Score = 32.0 bits (71), Expect = 5e-05
 Identities = 38/192 (19%), Positives = 86/192 (44%), Gaps = 24/192 (12%)

Query: 286 TVLIKDVAEQTGLLALNASIEAARAGDAGKGFAVVASE-----------IKSLAEEIKKS 334
           TV++  +  ++ +  LN ++EAAR   +G    V+A +           + ++   ++++
Sbjct: 203 TVVLALLLTRSIVAPLNRALEAARTIASGNLVQVIADDGKDEPGRLLQALATMQVSLRQT 262

Query: 335 VEDINRT---INGVNRKVEATIDLGISG----KDEVDKGVIAIDEVNGAFLKIKESVETT 387
           +E I  +   +    +++ A       G     +E+++   A++E+  A  ++  +  +T
Sbjct: 263 IEQIAGSATQLGAAAQELSAVTQESSRGLQQQHNEIEQAATAVNEMTAAVEEVARNAVST 322

Query: 388 SEKIN-SIKVNAERAVNNVETALKDSQDIASISEEFAATAEELTASAEEQSRIMNEIDDA 446
           SE  N S +   E     VET       I +++ +  ATA  +   A  Q R + ++ D 
Sbjct: 323 SEASNQSTQAAQEGRTRVVETV----DAIQTMTHDVQATASMIEGLA-VQGRDIGKVLDV 377

Query: 447 IEEITKSSEQIS 458
           I  I + +  ++
Sbjct: 378 IRAIAEQTNLLA 389