Pairwise Alignments

Query, 467 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 518 a.a., Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) from Pseudomonas fluorescens FW300-N2E2

 Score =  124 bits (312), Expect = 6e-33
 Identities = 88/272 (32%), Positives = 144/272 (52%), Gaps = 27/272 (9%)

Query: 190 QVADAASQVATAAADQSAKLQDVSDQLE----ATSEITSAVTDAADDTV---TAAIEIEE 242
           QVA AA Q++      +A + +   + +    A SE+T+ V + A D     TAA   ++
Sbjct: 249 QVASAAEQLSAVTEQTNAGVNNQKTETDHVATAMSEMTATVQNVARDAEEASTAASAADQ 308

Query: 243 NSEMGVKKVENAIETMQSITNVIENLGKAIQELGNESKKINEVTVLIKDVAEQTGLLALN 302
            +  G + V  AI  ++ +   +     A++ L  +S+KI  V  +IK VA+QT LLALN
Sbjct: 309 QASEGEQIVNEAIAQIKRLAEELNQSADAVRHLQEQSEKIGGVLDVIKAVAQQTNLLALN 368

Query: 303 ASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINRTINGVNRKVEATID-------L 355
           A+IEAARAG+AG+GFAVVA E++SLA   ++S E+I   + GV     A          L
Sbjct: 369 AAIEAARAGEAGRGFAVVADEVRSLALRTQRSTEEIESLVAGVQSGTHAVASGMESSQLL 428

Query: 356 GISGKDEVDKGVIAIDEVNGAFLKIK---ESVETTSEKINSIKVNAERAVNNVETALKDS 412
           G S  +   + VIA++ +      I+   + + T +E+ +++     R+V NV       
Sbjct: 429 GESSVEFTHRAVIALENITSKVSIIQAMNQQIATAAEQQSAVAEEINRSVINVR------ 482

Query: 413 QDIASISEEFAATAEELTASAEEQSRIMNEID 444
                ISE+ A+T EE  +S+ E +R+ +E++
Sbjct: 483 ----DISEQTASTCEETASSSTELARLGHELE 510



 Score = 43.1 bits (100), Expect = 2e-08
 Identities = 50/247 (20%), Positives = 105/247 (42%), Gaps = 34/247 (13%)

Query: 97  EKLKKDENSLKTYKKDVSNTFSEL----HTIFKSLEQGDFTIRANTDRKYNALQVTTNNA 152
           E+     N+ KT    V+   SE+      + +  E+   T  +  D++ +  +   N A
Sbjct: 262 EQTNAGVNNQKTETDHVATAMSEMTATVQNVARDAEEAS-TAASAADQQASEGEQIVNEA 320

Query: 153 IVNVSTMVNDLKKQIEYLNAELLKAKEDLVRAEETSEQVADAASQVATAAADQSAKLQD- 211
           I  +  +  +L +  + +   L +  E +    +  + VA   + +A  AA ++A+  + 
Sbjct: 321 IAQIKRLAEELNQSADAVR-HLQEQSEKIGGVLDVIKAVAQQTNLLALNAAIEAARAGEA 379

Query: 212 ------VSDQLEA--------TSEITSAVTDAADDTVTAAIEIEENSEMGVKKVE---NA 254
                 V+D++ +        T EI S V      T   A  +E +  +G   VE    A
Sbjct: 380 GRGFAVVADEVRSLALRTQRSTEEIESLVAGVQSGTHAVASGMESSQLLGESSVEFTHRA 439

Query: 255 IETMQSITNVI-------ENLGKAIQELGNESKKINEVTVLIKDVAEQTGLL---ALNAS 304
           +  +++IT+ +       + +  A ++    +++IN   + ++D++EQT        ++S
Sbjct: 440 VIALENITSKVSIIQAMNQQIATAAEQQSAVAEEINRSVINVRDISEQTASTCEETASSS 499

Query: 305 IEAARAG 311
            E AR G
Sbjct: 500 TELARLG 506



 Score = 30.0 bits (66), Expect = 2e-04
 Identities = 12/52 (23%), Positives = 27/52 (51%)

Query: 415 IASISEEFAATAEELTASAEEQSRIMNEIDDAIEEITKSSEQISKDVSKFKT 466
           +AS +E+ +A  E+  A    Q    + +  A+ E+T + + +++D  +  T
Sbjct: 250 VASAAEQLSAVTEQTNAGVNNQKTETDHVATAMSEMTATVQNVARDAEEAST 301