Pairwise Alignments

Query, 467 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 640 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

 Score =  122 bits (307), Expect = 3e-32
 Identities = 80/267 (29%), Positives = 131/267 (49%), Gaps = 14/267 (5%)

Query: 191 VADAASQVATAAADQSAKLQD----VSDQLEATSEITSAVTDA----------ADDTVTA 236
           + D  SQ++ AA + SA  Q     V+ Q E T ++ +A+ +           A+    A
Sbjct: 365 IRDGVSQISAAAEELSAVTQQTSAGVNSQKEETDQVATAMHEMSATVQEVARNAEQAALA 424

Query: 237 AIEIEENSEMGVKKVENAIETMQSITNVIENLGKAIQELGNESKKINEVTVLIKDVAEQT 296
           A E +  +  G + V   +  ++ + + +    +A+  L  ES KI  V  +I+ VAEQT
Sbjct: 425 ATEADSEAREGDRVVTEVVTQIERMASAVVRSTEAMTALQEESDKIGSVMNVIRAVAEQT 484

Query: 297 GLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINRTINGVNRKVEATIDLG 356
            LLALNA+IEAARAG+AG+GFAVVA E++ LA+  +KS E+I   +  +    +    + 
Sbjct: 485 NLLALNAAIEAARAGEAGRGFAVVADEVRGLAQRTQKSTEEIEGLVAALQNGTQQVASIM 544

Query: 357 ISGKDEVDKGVIAIDEVNGAFLKIKESVETTSEKINSIKVNAERAVNNVETALKDSQDIA 416
            + +D  D GV        +   I  +V         I   AE      E   +   ++ 
Sbjct: 545 HTSRDLTDSGVELARRAGASLGSITRTVSNIQAMNQQIAAAAEEQSAVAEEISRSVVNVR 604

Query: 417 SISEEFAATAEELTASAEEQSRIMNEI 443
            +SE+ AA +EE  AS+ E +R+  ++
Sbjct: 605 DVSEQTAAASEETAASSTELARLGGQL 631



 Score = 38.5 bits (88), Expect = 7e-07
 Identities = 30/162 (18%), Positives = 72/162 (44%), Gaps = 9/162 (5%)

Query: 156 VSTMVNDLKKQIEYLNAELLKAKEDLVRAEETSEQ---VADAASQVATAAADQSAKLQDV 212
           + +++N ++   E  N   L A  +  RA E       VAD    +A      + +++ +
Sbjct: 470 IGSVMNVIRAVAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRGLAQRTQKSTEEIEGL 529

Query: 213 SDQLEATSEITSAVTDAADDTVTAAIEIEENSEMGVKKVENAIETMQSITNVIENLGKAI 272
              L+  ++  +++   + D   + +E+   +   +  +   +  +Q++    + +  A 
Sbjct: 530 VAALQNGTQQVASIMHTSRDLTDSGVELARRAGASLGSITRTVSNIQAMN---QQIAAAA 586

Query: 273 QELGNESKKINEVTVLIKDVAEQTGLLA---LNASIEAARAG 311
           +E    +++I+   V ++DV+EQT   +     +S E AR G
Sbjct: 587 EEQSAVAEEISRSVVNVRDVSEQTAAASEETAASSTELARLG 628



 Score = 34.3 bits (77), Expect = 1e-05
 Identities = 73/380 (19%), Positives = 151/380 (39%), Gaps = 34/380 (8%)

Query: 97  EKLKKDENSLKTYKKDVSNTFSELHTIFKSLEQGDFTIR----ANTDRKYNALQVTTNNA 152
           E+L K+       +  + NTF     + +  EQ  +  +     N  RK  A        
Sbjct: 77  ERLDKNLGIYLAQQTQLLNTFKNPINVAQLKEQAGYNAQYQNSLNDMRKAYAQANGARTT 136

Query: 153 IVNVSTMVNDLKKQIEYLNAELLKAKED----LVRAEETSEQVADAASQVAT-AAADQSA 207
           I   +T + +L   +     +L   +ED    L+   +  E V  A   +    AA  + 
Sbjct: 137 IDGAATRLGELTAGVTNHVLQLPDYEEDRFAQLLAISQIKEDVQRAQYLLRVYMAAPAND 196

Query: 208 KLQDVSDQLEATSEITSAVTDAADDTVTAAIEIEENSEMGVKKVENAIETMQSITNVIEN 267
            ++ +  QL+           A D    AA++        + +  +AI+ +++ T  I  
Sbjct: 197 AVKAIYTQLDTAQATLGRHAGALDANSGAALQ---QIRTVLDEYRSAIQALETATQAI-- 251

Query: 268 LGKAIQELGNESKKINEVTVLIKDVAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSL 327
             KA QE+ ++ K+I    V I D   Q  L  L+     AR+        ++ S + +L
Sbjct: 252 -AKARQEMTDQQKEI----VRISDSLYQFQLDRLDVESSDARS-------RLIVSTLLAL 299

Query: 328 AEEIKKSVEDINRTINGVNRKVEATIDLGISGKDEVDKGVIAIDEVNGAFLKIKESVETT 387
              +  +   I R I    R   A ++   SG       +   DE+      I++   T 
Sbjct: 300 VLGVLAAWL-ITRQIILPLRTTMADVERIASGDLSETAQIQRRDELGVLQRGIQQMGSTL 358

Query: 388 SEKINSIKVNAERAVNNVETALKDSQDIASISEEFAATAEELTASAEEQSRIMNEIDDAI 447
            E I  I+      V+ +  A   ++++++++++ +A         ++ +  M+E+   +
Sbjct: 359 RELIGGIR----DGVSQISAA---AEELSAVTQQTSAGVNSQKEETDQVATAMHEMSATV 411

Query: 448 EEITKSSEQISKDVSKFKTE 467
           +E+ +++EQ +   ++  +E
Sbjct: 412 QEVARNAEQAALAATEADSE 431