Pairwise Alignments

Query, 467 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 522 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  120 bits (302), Expect = 8e-32
 Identities = 91/317 (28%), Positives = 160/317 (50%), Gaps = 22/317 (6%)

Query: 144 ALQVTTNNAIVNVSTMVNDLKKQIEY-LNAELLKAKEDLVRAEETSEQVADAASQ---VA 199
           A Q T++  I  + T    ++ Q+E  + ++    K  L R ++T+ Q+   A Q   +A
Sbjct: 206 ASQTTSDPLIARMYTDSRGVEAQLEMAMLSQQAHLKTCLTRLQDTAVQLQGQAKQADSLA 265

Query: 200 TAAADQSAKLQDVSDQLE-ATSEITSAVTDAADDTVTAAIEIEENSEMGVKKVENAIET- 257
            + A+  A+    ++Q+  A +E+ +   + A +   AA    E S + +   E   ET 
Sbjct: 266 QSCANGLAQQNQETEQVATAINEMAATTQEVASNVALAAEATREASRLTIHGREVTAETR 325

Query: 258 --MQSITNVIENLGKAIQELGNESKKINEVTVLIKDVAEQTGLLALNASIEAARAGDAGK 315
             +Q + + + + G+A+ +L N+S  I  V  +IK +A+QT LLALNA+IEAARAGD+G+
Sbjct: 326 KAIQQLADSVASTGEAVNQLANDSDAIGGVVDVIKSIADQTNLLALNAAIEAARAGDSGR 385

Query: 316 GFAVVASEIKSLAEEIKKSVEDINRTINGVNRKVEATIDLGISGKDEVDKGVIAIDEVNG 375
           GFAVVA E++ LA+   ++  +I++ I  +  +    +     G+ +  +GV  + + + 
Sbjct: 386 GFAVVADEVRQLAQRTAEATGEIHQLIEKLQLQARHAVQTTEEGRVQATRGVDQVAQADQ 445

Query: 376 AFLKIKESVETTSEKINSI-------KVNAERAVNNVETALK-------DSQDIASISEE 421
           A   I E++    +    I          A+   NNV T  +       D++  A +SE+
Sbjct: 446 ALTGINEAMGNIIDMTTQIASATEEQSAVADEISNNVSTIARLADQTSGDARSSALLSED 505

Query: 422 FAATAEELTASAEEQSR 438
            AATAE   A  E  +R
Sbjct: 506 LAATAEGQYALVERFNR 522