Pairwise Alignments

Query, 467 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 644 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  137 bits (345), Expect = 1e-36
 Identities = 88/304 (28%), Positives = 154/304 (50%), Gaps = 5/304 (1%)

Query: 145 LQVTTNNAIVNVSTMVNDLKKQIEYLNAELLKAKEDLVRAEETSEQVADAASQVATAAAD 204
           ++V  N+ I  +S   N   ++I     ++ +   +L  A E   + A      +    D
Sbjct: 340 IEVKGNDEIAQLSKGFNGFIEKIHQSIKDVAQTSRELQVAAEGVSRKALVTHDNSQQQRD 399

Query: 205 QSAKLQDVSDQLEAT-SEITSAVTDAADDTVTAAIEIEENSEMGVKKVENAIETMQSITN 263
           Q+ ++    +Q+ AT SEI S    AA+     A +   N++ G   V  A E +  + +
Sbjct: 400 QTIQVVTAINQMGATISEIASNAATAAE----TANQASGNADQGRNVVNKAKEAISRLAH 455

Query: 264 VIENLGKAIQELGNESKKINEVTVLIKDVAEQTGLLALNASIEAARAGDAGKGFAVVASE 323
            IEN GK +++L + +++I  +   I+ ++EQT LLALNA+IEAARAGD G+GFAVVA E
Sbjct: 456 DIENTGKVVEQLASTTQEIGSILDAIRGISEQTNLLALNAAIEAARAGDQGRGFAVVADE 515

Query: 324 IKSLAEEIKKSVEDINRTINGVNRKVEATIDLGISGKDEVDKGVIAIDEVNGAFLKIKES 383
           +++LA     S E+I + IN +    +  +    +GK    +GV A DE     + I + 
Sbjct: 516 VRNLASRTASSTEEIQKMINQLQNDAKNAVSAMDAGKTVTHQGVAASDEAVQVLMSISDR 575

Query: 384 VETTSEKINSIKVNAERAVNNVETALKDSQDIASISEEFAATAEELTASAEEQSRIMNEI 443
           +   S++   +    E     V T  ++ ++I +I+E   +TAEEL  +++    +   +
Sbjct: 576 IHDISDRNTQVATATEEQSTVVHTINQNIEEINAINEVTTSTAEELADASKSLRELSGRL 635

Query: 444 DDAI 447
           D  +
Sbjct: 636 DKLV 639



 Score = 49.3 bits (116), Expect = 4e-10
 Identities = 57/314 (18%), Positives = 122/314 (38%), Gaps = 12/314 (3%)

Query: 146 QVTTNNAIVNVSTMVNDLKKQIEYLNAE-----LLKAKEDLVRAEETSEQVADAASQV-- 198
           Q+   N +  +S  ++D+ + +     E      L   +  V+     EQV  +  Q+  
Sbjct: 176 QLVNGNTMSGMSKSMDDMVRLLNSFKIEDTGFVFLTNAQGEVQIHRQKEQVKSSLQQIYG 235

Query: 199 --ATAAADQSAKLQDVSDQLEATSEITSAVTDAADDTVTAAIEIEENSEMGVKKVENAIE 256
             A+A  ++S      +D       + S   ++ D  +   + + E         +  + 
Sbjct: 236 SGASALLNKSGFNLISTDYQGEEVMVASIYIESMDWFLVGTVPVHEVFAELDAVAQRMML 295

Query: 257 TMQSITNVIENLGKAIQELGNESKKINEVTVLIKDVAEQTGLLALNASIEAA-RAGDAGK 315
           T  ++  +   +G  I    + +  IN++     D+    G L+    ++         K
Sbjct: 296 TTLAVAAIFIFMG--IFLANSIAMPINQIAKRFTDLGRGDGDLSQRIEVKGNDEIAQLSK 353

Query: 316 GFAVVASEIKSLAEEIKKSVEDINRTINGVNRKVEATIDLGISGKDEVDKGVIAIDEVNG 375
           GF     +I    +++ ++  ++     GV+RK   T D     +D+  + V AI+++  
Sbjct: 354 GFNGFIEKIHQSIKDVAQTSRELQVAAEGVSRKALVTHDNSQQQRDQTIQVVTAINQMGA 413

Query: 376 AFLKIKESVETTSEKINSIKVNAERAVNNVETALKDSQDIASISEEFAATAEELTASAEE 435
              +I  +  T +E  N    NA++  N V  A +    +A   E      E+L ++ +E
Sbjct: 414 TISEIASNAATAAETANQASGNADQGRNVVNKAKEAISRLAHDIENTGKVVEQLASTTQE 473

Query: 436 QSRIMNEIDDAIEE 449
              I++ I    E+
Sbjct: 474 IGSILDAIRGISEQ 487