Pairwise Alignments

Query, 467 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 536 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  122 bits (305), Expect = 4e-32
 Identities = 83/301 (27%), Positives = 161/301 (53%), Gaps = 35/301 (11%)

Query: 170 LNAELLKAKEDLVRAEETSEQVADAASQVATAAADQSAKLQDVSDQLE----ATSEITSA 225
           +N  +    + LV + +++  VA+AA ++A++A + S  +    DQL     A +++T+ 
Sbjct: 247 INNSIAAVHDALVESVQSASSVAEAAIRIASSAEETSQAVVSQRDQLSQLATAMNQMTAT 306

Query: 226 VTDAA---DDTVTAAIEIEENSEMGVKKVENAIETMQSITNVIENLGKAIQELGNESKKI 282
           V D A   +DT    ++  + + +G K V ++++++++++  +      + +L     +I
Sbjct: 307 VADVAGHAEDTARDTLDASKEANLGDKDVHSSVDSIRALSVELGVATDQVNKLKEGVMQI 366

Query: 283 NEVTVLIKDVAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINRTI 342
           +EVT +I  ++EQT LLALNA+IEAARAGD G+GFAVVA E+++LA     S ++I   I
Sbjct: 367 SEVTSVISGISEQTNLLALNAAIEAARAGDQGRGFAVVADEVRNLASRTHHSTDEIQTMI 426

Query: 343 NGVNRKVEATIDLGISGKDEVDKGVIAIDEVNGAFLKIKESVETTSEKINSIKVNAERAV 402
           N + +       L +S    + K                    + +   NS+   AE A 
Sbjct: 427 NRLQQ-------LAVSTASAMQK--------------------SQALAANSV-ATAENAG 458

Query: 403 NNVETALKDSQDIASISEEFAATAEELTASAEEQSRIMNEIDDAIEEITKSSEQISKDVS 462
           +++   +   Q ++  + + A  AEE +A AEE +R ++ I+DA  E+++++  ++++  
Sbjct: 459 SDLSLIVNHIQHVSDKATQIATAAEEQSAVAEEMNRNVSGINDAALEMSQAATYLAEESE 518

Query: 463 K 463
           K
Sbjct: 519 K 519



 Score = 35.4 bits (80), Expect = 5e-06
 Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 11/109 (10%)

Query: 119 ELHTIFKSLEQGDFTIRANTDRKYNALQV----TTNNAIVNVSTMVNDLKKQIEYLNAEL 174
           E+ T+   L+Q   +  A+  +K  AL      T  NA  ++S +VN ++   +      
Sbjct: 421 EIQTMINRLQQLAVST-ASAMQKSQALAANSVATAENAGSDLSLIVNHIQHVSDKATQIA 479

Query: 175 LKAKEDLVRAEETSEQVA---DAA---SQVATAAADQSAKLQDVSDQLE 217
             A+E    AEE +  V+   DAA   SQ AT  A++S KL D+S QL+
Sbjct: 480 TAAEEQSAVAEEMNRNVSGINDAALEMSQAATYLAEESEKLADLSRQLD 528



 Score = 34.7 bits (78), Expect = 8e-06
 Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 21/111 (18%)

Query: 149 TNNAIVNVSTMVNDLKKQIEYLNAELLKAKEDLVRAEETSE--------------QVADA 194
           T+++   + TM+N L++      + + K++     +  T+E               V+D 
Sbjct: 415 THHSTDEIQTMINRLQQLAVSTASAMQKSQALAANSVATAENAGSDLSLIVNHIQHVSDK 474

Query: 195 ASQVATAAADQSAKLQDVSDQLEATSEITSAVTDAADDTVTAAIEIEENSE 245
           A+Q+ATAA +QSA  ++++  +       S + DAA +   AA  + E SE
Sbjct: 475 ATQIATAAEEQSAVAEEMNRNV-------SGINDAALEMSQAATYLAEESE 518



 Score = 30.0 bits (66), Expect = 2e-04
 Identities = 36/198 (18%), Positives = 80/198 (40%), Gaps = 25/198 (12%)

Query: 160 VNDLKKQIEYLNAELLKAKEDLVRAEETSEQVADAASQV----------ATAAADQSAKL 209
           +  L  ++     ++ K KE +++  E +  ++  + Q           A  A DQ    
Sbjct: 342 IRALSVELGVATDQVNKLKEGVMQISEVTSVISGISEQTNLLALNAAIEAARAGDQGRGF 401

Query: 210 QDVSDQLEATSEITSAVTDAADDTVTAAIEIEENSEMGVKKVE----NAIETMQSITNVI 265
             V+D++   +  T   TD     +    ++  ++   ++K +    N++ T        
Sbjct: 402 AVVADEVRNLASRTHHSTDEIQTMINRLQQLAVSTASAMQKSQALAANSVAT-------A 454

Query: 266 ENLGKAIQELGNESKKINEVTVLIKDVAEQTGLLALNASIEAARAGDAGKGFAVVASEIK 325
           EN G  +  + N  + +++    I   AE+   +A   +   +   DA    +  A+   
Sbjct: 455 ENAGSDLSLIVNHIQHVSDKATQIATAAEEQSAVAEEMNRNVSGINDAALEMSQAAT--- 511

Query: 326 SLAEEIKKSVEDINRTIN 343
            LAEE +K + D++R ++
Sbjct: 512 YLAEESEK-LADLSRQLD 528