Pairwise Alignments

Query, 467 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 564 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  113 bits (282), Expect = 2e-29
 Identities = 94/354 (26%), Positives = 175/354 (49%), Gaps = 44/354 (12%)

Query: 113 VSNTFSELHTIFKSLEQ-----GDFTIRANTDRKYNALQVTTNNAIVNVSTMVNDLKKQI 167
           VS   + L  +  SL+      GD T R         ++V + + I +V+   N    ++
Sbjct: 232 VSRGIAPLQHVVSSLQAVAAGGGDLTAR---------IKVESQDEIGDVAKAFNAFMDKL 282

Query: 168 EYLNAELLKAKEDLVRAEETSEQVADAASQVATAAADQSAKLQDVSDQLEATSEITSAVT 227
             L  ++  +   +  A +  +Q    AS        ++ K+      + A +E+++   
Sbjct: 283 HPLMTDIRASANTVEAAAQELDQQTSQASHKMDGHCLETDKV------VAAVTEMSATAR 336

Query: 228 DAADDTVTAAIEIEE-NSEMGV--KKVENAIETMQSITNVIENLGKAIQELGNESKKINE 284
           + A +T + A  IE  NS++ V  K+V  AI+ +  + N +     A+ +L  ++ KI +
Sbjct: 337 EVASNTYSTAQAIESANSQIAVAQKEVNLAIDGIGELVNEVNQTSAAVGDLSQQAAKITQ 396

Query: 285 VTVLIKDVAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAEEIKKSVEDINRTING 344
           V  +I D+AEQT LLALNA+IEAARAG+ G+GFAVVA E++SLA   + S ++I   +N 
Sbjct: 397 VLKVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQNSTKEIGEMLNA 456

Query: 345 VNRKVEATIDLGISGKDEVDKGVIAIDEVNGAFLKIKESVETTSEKINSIKVNAERAVNN 404
           +++ V   +      ++  +K   A++ V     +IKES+   S+ ++ I          
Sbjct: 457 LHQGVSKAVQSMNISQERGEK--TALESV-----QIKESLAGISKAVSLIH------DMG 503

Query: 405 VETALKDSQDIASISEEFAATAEELTASAEEQSRIMNEIDDAIEEITKSSEQIS 458
           ++T        AS +E+ +A AE++  +     +I+NE+ ++ ++    S  +S
Sbjct: 504 IQT--------ASAAEQQSAVAEDINQNLVAIQQIVNELSESFKQTESVSASLS 549



 Score = 30.4 bits (67), Expect = 2e-04
 Identities = 34/177 (19%), Positives = 76/177 (42%), Gaps = 10/177 (5%)

Query: 286 TVLIKDVAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAE--EIKKSVEDINRTIN 343
           T++   V    G+  L   + + +A  AG G      +++S  E  ++ K+       ++
Sbjct: 224 TIIAVSVLVSRGIAPLQHVVSSLQAVAAGGGDLTARIKVESQDEIGDVAKAFNAFMDKLH 283

Query: 344 GVNRKVEATIDLGISGKDEVDKGVI-AIDEVNGAFLKIKESVETTSEKINSIKVNAERAV 402
            +   + A+ +   +   E+D+    A  +++G  L+  + V   +E   + +   E A 
Sbjct: 284 PLMTDIRASANTVEAAAQELDQQTSQASHKMDGHCLETDKVVAAVTEMSATAR---EVAS 340

Query: 403 NNVETALKDSQDIASISEEFAATAEELTASAEEQSRIMNEIDDAIEEITKSSEQISK 459
           N   TA    Q I S + + A   +E+  + +    ++NE++     +   S+Q +K
Sbjct: 341 NTYSTA----QAIESANSQIAVAQKEVNLAIDGIGELVNEVNQTSAAVGDLSQQAAK 393