Pairwise Alignments

Query, 467 a.a., methyl-accepting chemotaxis protein from Methanococcus maripaludis S2

Subject, 537 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  125 bits (314), Expect = 3e-33
 Identities = 89/316 (28%), Positives = 155/316 (49%), Gaps = 27/316 (8%)

Query: 153 IVNVSTMVNDLKKQIEYLNAELLKAKEDLVRAEETSEQVADAASQVATAAADQSAKLQDV 212
           I +++ M  DL+  IE + +          +      +VAD++ Q ++AA   SA     
Sbjct: 245 IRSLAIMQRDLRSMIEVVRSNANDVSGMSRQLSSGCHEVADSSRQQSSAAGTMSA----- 299

Query: 213 SDQLEATSEITSAV---TDAADDTVTAAIEIEENSEMGVKKVENAIETMQSITNVIENLG 269
                ATSE+T+++   T  A   +  A + E  ++ G + +   +  M SI    +   
Sbjct: 300 -----ATSEMTASIEEITRHAGQALEMASQAESLAKNGGRVIHQVVSDMDSIARSAQQSA 354

Query: 270 KAIQELGNESKKINEVTVLIKDVAEQTGLLALNASIEAARAGDAGKGFAVVASEIKSLAE 329
           + I+ L  +S+ I  +  +IK +A+QT LLALNA+IEAARAG+ G+GFAVVA E++SLA 
Sbjct: 355 QVIRTLDKDSEGIFNIIQVIKGIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAG 414

Query: 330 EIKKSVEDINRTINGVNRKVEATIDLGISGKDEVDKGVIAIDEVNGAFLKIKESVETTSE 389
               S ++I   +  + +     +    +G  +VDKG+    EV  A   I  +  +T++
Sbjct: 415 RTSASTQEITAMVARIQQSTREAVTSMEAGVAQVDKGMAVTAEVERAISDILAATLSTTQ 474

Query: 390 KINSIKVNAERAVNNVETALKDSQDIASISEEFAATAEELTASAEEQSRIMNEIDDAIEE 449
            +N I            T     Q +A  S E A   E + + +E  SR++ +     +E
Sbjct: 475 LVNDI------------TRTIGEQSLA--SNEIAHQVEMIASMSEGNSRVIGQTASTTDE 520

Query: 450 ITKSSEQISKDVSKFK 465
           ++  + Q+S+ V +F+
Sbjct: 521 LSVMAGQLSQSVDRFQ 536



 Score = 32.3 bits (72), Expect = 4e-05
 Identities = 16/75 (21%), Positives = 37/75 (49%)

Query: 385 ETTSEKINSIKVNAERAVNNVETALKDSQDIASISEEFAATAEELTASAEEQSRIMNEID 444
           +  S  I S+ +      + +E    ++ D++ +S + ++   E+  S+ +QS     + 
Sbjct: 239 DEASMLIRSLAIMQRDLRSMIEVVRSNANDVSGMSRQLSSGCHEVADSSRQQSSAAGTMS 298

Query: 445 DAIEEITKSSEQISK 459
            A  E+T S E+I++
Sbjct: 299 AATSEMTASIEEITR 313